Evidence map›Paper›PMID 37107660›Full record

ArticleGenes2023

Mapping the Genomic Regions Controlling Germination Rate and Early Seedling Growth Parameters in Rice.

Shakti Prakash Mohanty, Deepak Kumar Nayak, Priyadarsini Sanghamitra, Saumya Ranjan Barik, Elssa Pandit, Abhisarika Behera, Dipti Ranjan Pani, Shibani Mohapatra, Reshmi Raj K R, Kartik Chandra Pradhan and 8 more

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Genes, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors.

Shakti Prakash MohantyICAR-National Rice Research Institute, Cuttack 753006, India.
Deepak Kumar NayakICAR-National Rice Research Institute, Cuttack 753006, India.
Priyadarsini SanghamitraICAR-National Rice Research Institute, Cuttack 753006, India.
Saumya Ranjan BarikICAR-National Rice Research Institute, Cuttack 753006, India.ORCID 0000-0002-2089-9127
Elssa PanditDepartment of Biosciences and Biotechnology, Fakir Mohan University, Balasore 756020, India.ORCID 0000-0001-9485-7248
Abhisarika BeheraICAR-National Rice Research Institute, Cuttack 753006, India.
Dipti Ranjan PaniICAR-National Bureau of Plant Genetic Resources, Base Center, Cuttack 753006, India.
Shibani MohapatraICAR-National Rice Research Institute, Cuttack 753006, India.ORCID 0000-0002-3073-1731
Reshmi Raj K RICAR-National Rice Research Institute, Cuttack 753006, India.
Kartik Chandra PradhanCollege of Agriculture, Odisha University of Agriculture & Technology, Bhubaneswar 751003, India.
Chita Ranjan SahooDirectorate of Research, Odisha University of Agriculture & Technology, Bhubaneswar 751003, India.ORCID 0009-0003-5467-596X
Mihir Ranjan MohantyRegional Research and Technology Transfer Station (RRTTS), Odisha University of Agriculture & Technology, Jeypore 764001, India.
Chinmayee BeheraDepartment of Genetics and Plant Breeding, Institute of Agricultural Sciences, SOA University, Bhubaneswar 753001, India.
Alok Kumar PandaEnvironmental Science Laboratory, School of Applied Sciences, KIIT Deemed to be University, Bhubaneswar 751024, India.ORCID 0000-0002-4452-993X
Binod Kumar JenaKrishi Vigyan Kendra, Odisha University of Agriculture & Technology, Rayagada 765022, India.
Lambodar BeheraICAR-National Rice Research Institute, Cuttack 753006, India.
Prasanta K DashICAR-National Institute for Plant Biotechnology, Pusa, New Delhi 110012, India.
Sharat Kumar PradhanICAR-National Rice Research Institute, Cuttack 753006, India.ORCID 0000-0001-7716-0721

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Seed vigor is the key performance parameter of good quality seed. A panel was prepared by shortlisting genotypes from all the phenotypic groups representing seedling growth parameters from a total of 278 germplasm lines. A wide variation was observed for the traits in the population. The panel was classified into four genetic structure groups. Fixation indices indicated the existence of linkage disequilibrium in the population. A moderate to high level of diversity parameters was assessed using 143 SSR markers. Principal component, coordinate, neighbor-joining tree and cluster analyses showed subpopulations with a fair degree of correspondence with the growth parameters. Marker-trait association analysis detected eight novel QTLs, namely

Indexed as

OryzaSeedlingsGenomicsGerminationQuantitative Trait Lociabsolute growth rateassociation mappinggermination rateindica ricerelative growth raterelative shoot growth

Identifiers

PMID37107660
PMCPMC10138111

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.