Evidence map›Paper›PMID 37106439›Full record

ArticleBiological research2023

Zebrafish ambra1b knockout reveals a novel role for Ambra1 in primordial germ cells survival, sex differentiation and reproduction.

Camilla Maria Fontana, Francesca Terrin, Nicola Facchinello, Giacomo Meneghetti, Alberto Dinarello, Lisa Gambarotto, Annalisa Zuccarotto, Micol Caichiolo, Ginevra Brocca, Ranieri Verin and 5 more

Open access · goldAbstract read
In one paragraph

Article in Biological research, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.8field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Zebrafish as a model system for studying reproductive diseases.Frontiers in cell and developmental biology · 2024
    Review
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 4 institutions in 5 countries.

Camilla Maria FontanaDepartment of Biology, University of Padua, Padua, Italy.
Francesca TerrinDepartment of Biology, University of Padua, Padua, Italy.
Nicola FacchinelloDepartment of Molecular Medicine, University of Padua, Padua, Italy.
Giacomo MeneghettiDepartment of Biology, University of Padua, Padua, Italy.
Alberto DinarelloDepartment of Biology, University of Padua, Padua, Italy.
Lisa GambarottoDepartment of Molecular Medicine, University of Padua, Padua, Italy.
Annalisa ZuccarottoDepartment of Biology, University of Padua, Padua, Italy.
Micol CaichioloDepartment of Biology, University of Padua, Padua, Italy.
Ginevra BroccaDepartment of Comparative Biomedicine and Food Science (BCA), University of Padova, Legnaro, PD, Italy.
Ranieri VerinDepartment of Comparative Biomedicine and Food Science (BCA), University of Padova, Legnaro, PD, Italy.
Francesca NazioDepartment of Pediatric Hemato-Oncology and Cell and Gene Therapy, IRCCS Bambino Gesù Children's Hospital, Rome, Italy.
Oliana CarnevaliDepartment of Life and Environmental Sciences, Polytechnic University of Marche, Ancona, Italy.
Francesco CecconiCell Stress and Survival Unit, Danish Cancer Society Research Center, Copenhagen, Denmark.
Paolo BonaldoDepartment of Molecular Medicine, University of Padua, Padua, Italy.
Luisa Dalla ValleDepartment of Biology, University of Padua, Padua, Italy. luisa.dallavalle@unipd.it.ORCID http://orcid.org/0000-0001-8097-6369
University of Padua · ITMarche Polytechnic University · ITUniversità Cattolica del Sacro Cuore · ITUniversity of Rome Tor Vergata · IT

Funding

Fondazione Telethon GGP14202
6 · The paper itself

Abstract

backgroundAMBRA1 is an intrinsically disordered protein, working as a scaffold molecule to coordinate, by protein-protein interaction, many cellular processes, including autophagy, mitophagy, apoptosis and cell cycle progression. The zebrafish genome contains two ambra1 paralogous genes (a and b), both involved in development and expressed at high levels in the gonads. Characterization of the zebrafish paralogous genes mutant lines generated by CRISPR/Cas9 approach showed that ambra1b knockout leads to an all-male population.

resultsWe demonstrated that the silencing of the ambra1b gene determines a reduction of primordial germ cells (PGCs), a condition that, in the zebrafish, leads to the development of all-male progeny. PGC reduction was confirmed by knockdown experiments and rescued by injection of ambra1b and human AMBRA1 mRNAs, but not ambra1a mRNA. Moreover, PGC loss was not rescued by injection with human AMBRA1 mRNA mutated in the CUL4-DDB1 binding region, thus suggesting that interaction with this complex is involved in PGC protection from loss. Results from zebrafish embryos injected with murine Stat3 mRNA and stat3 morpholino suggest that Ambra1b could indirectly regulate this protein through CUL4-DDB1 interaction. According to this, Ambra1

conclusionsBy exploiting ambra1a and ambra1b knockout zebrafish lines, we prove the sub-functionalization between the two paralogous zebrafish genes and uncover a novel function of Ambra1 in the protection from excessive PGC loss, which seems to require binding with the CUL4-DDB1 complex. Both genes seem to play a role in the regulation of reproductive physiology.

Indexed as

Sex DifferentiationZebrafishAdaptor Proteins, Signal TransducingAnimalsFemaleGerm CellsHumansMaleMammalsMiceReproductionRNA, MessengerZebrafish ProteinsAdaptor Proteins, Signal TransducingAmbra1a protein, zebrafishAmbra1b protein, zebrafishRNA, MessengerZebrafish ProteinsAmbra1MousePGCsReproductionSex differentiationZebrafish

Identifiers

PMID37106439
PMCPMC10142490
OpenAlexW4367318379

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.