Evidence map›Paper›PMID 37106322›Full record

ArticleBMC pulmonary medicine2023

Metagenomic next-generation sequencing for pulmonary infections diagnosis in patients with diabetes.

Siqin Zhang, Jing Ou, Yuxue Tan, Bin Yang, Yaoyao Wu, Lin Liu

Open access · goldAbstract read
In one paragraph

Article in BMC pulmonary medicine, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed, 1 pooled it
0.9field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 1 synthesis or guideline pooled it, 4 citations in OpenAlex.

  1. Pooled it
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Siqin ZhangDepartment of Endocrinology and Metabolism, Guizhou Provincial People's Hospital, Guiyang, Guizhou, 550002, China.
Jing OuSchool of Medicine, Zunyi Medical University, Zunyi, Guizhou, 563000, China.
Yuxue TanSchool of Medicine, Zunyi Medical University, Zunyi, Guizhou, 563000, China.
Bin YangDepartment of Central Laboratory, Guizhou Provincial People's Hospital, Guiyang, Guizhou, 550002, China.
Yaoyao WuDepartment of Respiratory and Critical Medicine, Guizhou Provincial People's Hospital, No. 83, Zhongshan East Road, Guiyang, Guizhou, 550002, China.
Lin LiuDepartment of Respiratory and Critical Medicine, Guizhou Provincial People's Hospital, No. 83, Zhongshan East Road, Guiyang, Guizhou, 550002, China. liulin0956@163.com.
Guizhou Provincial People's Hospital · CNZunyi Medical University · CN

Funding

Guizhou Province Science and Technology Project ZK[2022]254Science and Technology foundation of Guizhou Health Commission gzwkj2021-088
6 · The paper itself

Abstract

backgroundDiabetes mellitus is a major cause of high mortality and poor prognosis in patients with pulmonary infections. However, limited data on the application of metagenomic next-generation sequencing (mNGS) are available for diabetic patients. This study aimed to evaluate the diagnostic performance of mNGS in diabetic patients with pulmonary infections.

methodsWe retrospectively reviewed 184 hospitalized patients with pulmonary infections at Guizhou Provincial People's Hospital between January 2020 to October 2021. All patients were subjected to both mNGS analysis of bronchoalveolar lavage fluid (BALF) and conventional testing. Positive rate by mNGS and the consistency between mNGS and conventional testing results were evaluated for diabetic and non-diabetic patients.

resultsA total of 184 patients with pulmonary infections were enrolled, including 43 diabetic patients and 141 non-diabetic patients. For diabetic patients, the microbial positive rate by mNGS was significantly higher than that detected by conventional testing methods, primarily driven by bacterial detection (microbes: 95.3% vs. 67.4%, P = 0.001; bacteria: 72.1% vs. 37.2%, P = 0.001). mNGS and traditional tests had similar positive rates with regard to fungal and viral detection in diabetic patients. Klebsiella pneumoniae was the most common pathogen identified by mNGS in patients with diabetes. Moreover, mNGS identified pathogens in 92.9% (13/14) of diabetic patients who were reported negative by conventional testing. No significant difference was found in the consistency of the two tests between diabetic and non-diabetic groups.

conclusionsmNGS is superior to conventional microbiological tests for bacterial detection in diabetic patients with pulmonary infections. mNGS is a valuable tool for etiological diagnosis of pulmonary infections in diabetic patients.

Indexed as

Diabetes MellitusPneumoniaBronchoalveolar Lavage FluidHigh-Throughput Nucleotide SequencingHumansKlebsiella pneumoniaeRetrospective StudiesSensitivity and SpecificityDiabetesDiagnosisMetagenomic next-generation sequencingPulmonary infection

Identifiers

PMID37106322
PMCPMC10141947
OpenAlexW4367172444

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.