Evidence map›Paper›PMID 37106230›Full record

ArticleNature methods2023

Direct determination of oligomeric organization of integral membrane proteins and lipids from intact customizable bilayer.

Aniruddha Panda, Fabian Giska, Anna L Duncan, Alexander J Welch, Caroline Brown, Rachel McAllister, Parameswaran Hariharan, Jean N D Goder, Jeff Coleman, Sathish Ramakrishnan and 5 more

Open access · greenAbstract read
In one paragraph

Article in Nature methods, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
6.5field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 42 citations in OpenAlex.

  1. Controlling membrane tension by dynamic DNA nanorings.bioRxiv : the preprint server for biology · 2026
    Article
  2. Article
  3. Two-step mechanism of Bruton's tyrosine kinase membrane recruitment and activation.Proceedings of the National Academy of Sciences of the United States of America · 2026
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  12. Review
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  14. To 200,000ACS central science · 2024
    Article
  15. Article
  16. Article
  17. Capturing RAS oligomerization on a membrane.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 5 institutions in 5 countries.

Aniruddha PandaNanobiology Institute, Yale University, West Haven, CT, USA.ORCID 0000-0002-9447-9547
Fabian GiskaNanobiology Institute, Yale University, West Haven, CT, USA.
Anna L DuncanDepartment of Biochemistry, University of Oxford, Oxford, UK.ORCID 0000-0001-9873-4552
Alexander J WelchDepartment of Biochemistry, University of Oxford, Oxford, UK.ORCID 0000-0003-2125-255X
Caroline BrownNanobiology Institute, Yale University, West Haven, CT, USA.
Rachel McAllisterNanobiology Institute, Yale University, West Haven, CT, USA.
Parameswaran HariharanDepartment of Cell Physiology and Molecular Biophysics, School of Medicine, Texas Tech University Health Sciences Center, Lubbock, TX, USA.ORCID 0000-0002-6020-1547
Jean N D GoderNanobiology Institute, Yale University, West Haven, CT, USA.
Jeff ColemanNanobiology Institute, Yale University, West Haven, CT, USA.
Sathish RamakrishnanNanobiology Institute, Yale University, West Haven, CT, USA.ORCID 0000-0002-7844-2234
Frédéric PincetNanobiology Institute, Yale University, West Haven, CT, USA.ORCID 0000-0002-4243-2157
Lan GuanDepartment of Cell Physiology and Molecular Biophysics, School of Medicine, Texas Tech University Health Sciences Center, Lubbock, TX, USA.ORCID 0000-0002-2274-361X
Shyam KrishnakumarNanobiology Institute, Yale University, West Haven, CT, USA.ORCID 0000-0001-6148-3251
James E RothmanNanobiology Institute, Yale University, West Haven, CT, USA.
Kallol GuptaNanobiology Institute, Yale University, West Haven, CT, USA. Kallol.gupta@yale.edu.ORCID 0000-0002-3557-3242
Yale University · USTexas Tech University · USAarhus University · DKCentre National de la Recherche Scientifique · FRUniversity of Oxford · GB

Funding

Regulation of Membrane Fusion in ExocytosisR01DK027044 · NIDDK · YALE UNIVERSITY · PI KRISHNAKUMAR, SHYAM S · 1986 to 2021
$8.2M
Understanding organization of membrane proteins and lipids through lipid vesicle native mass spectrometryR01GM141192 · NIGMS · YALE UNIVERSITY · PI GUPTA, KALLOL · 2021 to 2025
$1.9M
Integrated approaches to symport mechanisms of membrane transportersR01GM122759 · NIGMS · TEXAS TECH UNIVERSITY HEALTH SCIS CENTER · PI GUAN, LAN · 2018 to 2021
$1.4M
Recombinant expression and functional characterization of a lysophosphatidylcholine transporterR21NS105863 · NINDS · TEXAS TECH UNIVERSITY HEALTH SCIS CENTER · PI GUAN, LAN · 2018 to 2019
$421k
NIDDK NIH HHS R01 DK027044NIGMS NIH HHS R01 GM122759NIGMS NIH HHS R01 GM141192NINDS NIH HHS R21 NS105863
6 · The paper itself

Abstract

Hierarchical organization of integral membrane proteins (IMP) and lipids at the membrane is essential for regulating myriad downstream signaling. A quantitative understanding of these processes requires both detections of oligomeric organization of IMPs and lipids directly from intact membranes and determination of key membrane components and properties that regulate them. Addressing this, we have developed a platform that enables native mass spectrometry (nMS) analysis of IMP-lipid complexes directly from intact and customizable lipid membranes. Both the lipid composition and membrane properties (such as curvature, tension, and fluidity) of these bilayers can be precisely customized to a target membrane. Subsequent direct nMS analysis of these intact proteolipid vesicles can yield the oligomeric states of the embedded IMPs, identify bound lipids, and determine the membrane properties that can regulate the observed IMP-lipid organization. Applying this method, we show how lipid binding regulates neurotransmitter release and how membrane composition regulates the functional oligomeric state of a transporter.

Indexed as

LipidsMembrane ProteinsBiological TransportLipid BilayersMass SpectrometryLipid BilayersLipidsMembrane Proteins

Identifiers

PMID37106230
PMCPMC10932606
OpenAlexW4367291413

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.