Evidence map›Paper›PMID 37106027›Full record

ArticleCommunications biology2023

Spatial transcriptomics reveal topological immune landscapes of Asian head and neck angiosarcoma.

Jui Wan Loh, Jing Yi Lee, Abner Herbert Lim, Peiyong Guan, Boon Yee Lim, Bavani Kannan, Elizabeth Chun Yong Lee, Ning Xin Gu, Tun Kiat Ko, Cedric Chuan-Young Ng and 6 more

Open access · goldAbstract read
In one paragraph

Article in Communications biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
5.3field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 23 citations in OpenAlex.

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  8. Article
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  10. Review
  11. Article
  12. miR-497 Target Gene Regulatory Network in Angiosarcoma.Molecular cancer research : MCR · 2024
    Article
  13. Article
  14. Review
  15. Frontiers in genetics · 2024
    Article
  16. Article
  17. Target gene regulatory network of miR-497 in angiosarcoma.bioRxiv : the preprint server for biology · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 3 institutions in 1 country.

Jui Wan LohCancer Discovery Hub, National Cancer Centre Singapore, Singapore, Singapore.
Jing Yi LeeCancer Discovery Hub, National Cancer Centre Singapore, Singapore, Singapore.
Abner Herbert LimLaboratory of Cancer Epigenome, Division of Medical Sciences, National Cancer Centre Singapore, Singapore, Singapore.ORCID 0000-0003-0598-1568
Peiyong GuanGenome Institute of Singapore, Agency of Science, Technology and Research (ASTAR), Singapore, Singapore.
Boon Yee LimCancer Discovery Hub, National Cancer Centre Singapore, Singapore, Singapore.
Bavani KannanCancer Discovery Hub, National Cancer Centre Singapore, Singapore, Singapore.ORCID 0000-0001-6140-4824
Elizabeth Chun Yong LeeCancer Discovery Hub, National Cancer Centre Singapore, Singapore, Singapore.
Ning Xin GuMGI Tech Singapore PTE LTD, Singapore, Singapore.ORCID 0000-0002-3085-8521
Tun Kiat KoCancer Discovery Hub, National Cancer Centre Singapore, Singapore, Singapore.
Cedric Chuan-Young NgCancer Discovery Hub, National Cancer Centre Singapore, Singapore, Singapore.ORCID 0000-0002-7150-4674
Jeffrey Chun Tatt LimInstitute of Molecular and Cell Biology, Agency of Science, Technology and Research (ASTAR), Singapore, Singapore.
Joe YeongInstitute of Molecular and Cell Biology, Agency of Science, Technology and Research (ASTAR), Singapore, Singapore.
Jing Quan LimLymphoma Genomic Translational Research Laboratory, Division of Cellular and Molecular Research, National Cancer Centre Singapore, Singapore, Singapore.ORCID 0000-0003-3732-8707
Choon Kiat OngLymphoma Genomic Translational Research Laboratory, Division of Cellular and Molecular Research, National Cancer Centre Singapore, Singapore, Singapore.
Bin Tean TehLaboratory of Cancer Epigenome, Division of Medical Sciences, National Cancer Centre Singapore, Singapore, Singapore. teh.bin.tean@singhealth.com.sg.ORCID 0000-0003-1514-1124
Jason Yongsheng ChanCancer Discovery Hub, National Cancer Centre Singapore, Singapore, Singapore. jason.chan.y.s@nccs.com.sg.ORCID 0000-0002-4801-3703
National Cancer Centre Singapore · SGAgency for Science, Technology and Research · SGDuke-NUS Medical School · SG

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Angiosarcomas are rare malignant tumors of the endothelium, arising commonly from the head and neck region (AS-HN) and recently associated with ultraviolet (UV) exposure and human herpesvirus-7 infection. We examined 81 cases of angiosarcomas, including 47 cases of AS-HN, integrating information from whole genome sequencing, gene expression profiling and spatial transcriptomics (10X Visium). In the AS-HN cohort, we observed recurrent somatic mutations in CSMD3 (18%), LRP1B (18%), MUC16 (18%), POT1 (16%) and TP53 (16%). UV-positive AS-HN harbored significantly higher tumor mutation burden than UV-negative cases (p = 0.0294). NanoString profiling identified three clusters with distinct tumor inflammation signature scores (p < 0.001). Spatial transcriptomics revealed topological profiles of the tumor microenvironment, identifying dominant but tumor-excluded inflammatory signals in immune-hot cases and immune foci even in otherwise immune-cold cases. In conclusion, spatial transcriptomics reveal the tumor immune landscape of angiosarcoma, and in combination with multi-omic information, may improve implementation of treatment strategies.

Indexed as

HemangiosarcomaGene Expression ProfilingHumansTranscriptomeTumor Microenvironment

Identifiers

PMID37106027
PMCPMC10140281
OpenAlexW4367320708

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.