Evidence map›Paper›PMID 37105976›Full record

ArticleNature communications2023

HMGN1 enhances CRISPR-directed dual-function A-to-G and C-to-G base editing.

Chao Yang, Zhenzhen Ma, Keshan Wang, Xingxiao Dong, Meiyu Huang, Yaqiu Li, Xiagu Zhu, Ju Li, Zhihui Cheng, Changhao Bi and 1 more

Abstract read
In one paragraph

Article in Nature communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

  1. Article
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  4. Review
  5. Review
  6. Article
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  14. CRISPR technologies for genome, epigenome and transcriptome editing.Nature reviews. Molecular cell biology · 2024
    Review
  15. Article
  16. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Chao YangTianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, Tianjin, China.
Zhenzhen MaCollege of Life Sciences, Nankai University, Tianjin, China.
Keshan WangDepartment of Urology, Union Hospital, Tongji Medical College, Huazhong University of Science and Technology, Wuhan, China.
Xingxiao DongSchool of Biological Engineering, Dalian Polytechnic University, Dalian, China.
Meiyu HuangCollege of Life Sciences, Guangxi Normal University, Guilin, China.
Yaqiu LiTianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, Tianjin, China.
Xiagu ZhuCollege of Biotechnology, Tianjin University of Science and Technology, Tianjin, China.
Ju LiCollege of Life Sciences, Tianjin Normal University, Tianjin, China.ORCID 0000-0003-0037-4144
Zhihui ChengCollege of Life Sciences, Nankai University, Tianjin, China.
Changhao BiTianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, Tianjin, China. bi_ch@tib.cas.cn.ORCID 0000-0002-1940-8511
Xueli ZhangTianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, Tianjin, China. zhang_xl@tib.cas.cn.ORCID 0000-0002-8660-4037

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

C-to-G base editors have been successfully constructed recently, but limited work has been done on concurrent C-to-G and A-to-G base editing. In addition, there is also limited data on how chromatin-associated factors affect the base editing. Here, we test a series of chromatin-associated factors, and chromosomal protein HMGN1 was found to enhance the efficiency of both C-to-G and A-to-G base editing. By fusing HMGN1, GBE and ABE to Cas9, we develop a CRISPR-based dual-function A-to-G and C-to-G base editor (GGBE) which is capable of converting simultaneous A and C to G conversion with substantial editing efficiency. Accordingly, the HMGN1 role shown in this work and the resulting GGBE tool further broaden the genome manipulation capacity of CRISPR-directed base editors.

Indexed as

Gene EditingHMGN1 ProteinChromatinCRISPR-Cas SystemsGenomeTranscription FactorsChromatinHMGN1 ProteinTranscription Factors

Identifiers

PMID37105976
PMCPMC10140177

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.