Evidence map›Paper›PMID 37104137›Full record

ArticleTomography (Ann Arbor, Mich.)2023

Toward Practical Integration of Omic and Imaging Data in Co-Clinical Trials.

Emel Alkim, Heidi Dowst, Julie DiCarlo, Lacey E Dobrolecki, Anadulce Hernández-Herrera, David A Hormuth, Yuxing Liao, Apollo McOwiti, Robia Pautler, Mothaffar Rimawi and 8 more

Open access · goldAbstract read
In one paragraph

Article in Tomography (Ann Arbor, Mich.), 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.9field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 4 citations in OpenAlex.

  1. The Next Frontier in Quantitative Co-Clinical Imaging to Advance Functional Precision Oncology.Clinical cancer research : an official journal of the American Association for Cancer Research · 2026
    Article
  2. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 3 institutions in 1 country.

Emel AlkimDepartment of Biomedical Data Science, Stanford University School of Medicine, Stanford, CA 94305, USA.
Heidi DowstDan L. Duncan Cancer Center, Baylor College of Medicine, Houston, TX 77030, USA.ORCID 0000-0001-6824-8553
Julie DiCarloOden Institute for Computational Engineering and Sciences, Austin, TX 78712, USA.ORCID 0000-0002-6965-3611
Lacey E DobroleckiLester and Sue Smith Breast Center, Baylor College of Medicine, Houston, TX 77030, USA.
Anadulce Hernández-HerreraDan L. Duncan Cancer Center, Baylor College of Medicine, Houston, TX 77030, USA.
David A HormuthOden Institute for Computational Engineering and Sciences, Austin, TX 78712, USA.ORCID 0000-0002-9643-1694
Yuxing LiaoLester and Sue Smith Breast Center, Baylor College of Medicine, Houston, TX 77030, USA.ORCID 0000-0002-1238-2021
Apollo McOwitiDan L. Duncan Cancer Center, Baylor College of Medicine, Houston, TX 77030, USA.
Robia PautlerDepartment of Physiology, Baylor College of Medicine, Houston, TX 77030, USA.ORCID 0000-0001-7952-8526
Mothaffar RimawiLester and Sue Smith Breast Center, Baylor College of Medicine, Houston, TX 77030, USA.
Ashley RoarkLester and Sue Smith Breast Center, Baylor College of Medicine, Houston, TX 77030, USA.
Ramakrishnan Rajaram SrinivasanLester and Sue Smith Breast Center, Baylor College of Medicine, Houston, TX 77030, USA.
Jack VirostkoOden Institute for Computational Engineering and Sciences, Austin, TX 78712, USA.ORCID 0000-0003-3413-8801
Bing ZhangLester and Sue Smith Breast Center, Baylor College of Medicine, Houston, TX 77030, USA.ORCID 0000-0001-8676-2425
Fei ZhengDan L. Duncan Cancer Center, Baylor College of Medicine, Houston, TX 77030, USA.
Daniel L RubinDepartment of Biomedical Data Science, Stanford University School of Medicine, Stanford, CA 94305, USA.ORCID 0000-0001-5057-4369
Thomas E YankeelovOden Institute for Computational Engineering and Sciences, Austin, TX 78712, USA.ORCID 0000-0001-6201-3913
Michael T LewisDan L. Duncan Cancer Center, Baylor College of Medicine, Houston, TX 77030, USA.ORCID 0000-0002-6330-4007
Baylor College of Medicine · USLivestrong Foundation · USStanford University · US

Funding

Tumor BiologyP30CA125123 · NCI · BAYLOR COLLEGE OF MEDICINE · PI Suzanne AW Fuqua · 2007 to 2026
$73.9M
INTEGRATING OMICS AND QUANTITATIVE IMAGING DATA IN CO-CLINICAL TRIALS TO PREDICT TREATMENT RESPONSE IN TRIPLE NEGATIVE BREAST CANCERU24CA226110 · NCI · BAYLOR COLLEGE OF MEDICINE · PI LEWIS, MICHAEL T., RUBIN, DANIEL L · 2019 to 2023
$3.2M
NCI NIH HHS P30 CA125123NCI NIH HHS U24 CA226110
6 · The paper itself

Abstract

Co-clinical trials are the concurrent or sequential evaluation of therapeutics in both patients clinically and patient-derived xenografts (PDX) pre-clinically, in a manner designed to match the pharmacokinetics and pharmacodynamics of the agent(s) used. The primary goal is to determine the degree to which PDX cohort responses recapitulate patient cohort responses at the phenotypic and molecular levels, such that pre-clinical and clinical trials can inform one another. A major issue is how to manage, integrate, and analyze the abundance of data generated across both spatial and temporal scales, as well as across species. To address this issue, we are developing MIRACCL (molecular and imaging response analysis of co-clinical trials), a web-based analytical tool. For prototyping, we simulated data for a co-clinical trial in "triple-negative" breast cancer (TNBC) by pairing pre- (T0) and on-treatment (T1) magnetic resonance imaging (MRI) from the I-SPY2 trial, as well as PDX-based T0 and T1 MRI. Baseline (T0) and on-treatment (T1) RNA expression data were also simulated for TNBC and PDX. Image features derived from both datasets were cross-referenced to omic data to evaluate MIRACCL functionality for correlating and displaying MRI-based changes in tumor size, vascularity, and cellularity with changes in mRNA expression as a function of treatment.

Indexed as

Triple Negative Breast NeoplasmsHumansImage Processing, Computer-AssistedMagnetic Resonance Imagingbreast cancercancer informaticscancer modelingmagnetic resonance imaging (MRI)multi-omicsradiomics

Identifiers

PMID37104137
PMCPMC10144684
OpenAlexW4364382465

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.