Evidence map›Paper›PMID 37104131›Full record

ArticleTomography (Ann Arbor, Mich.)2023

An Online Repository for Pre-Clinical Imaging Protocols (PIPs).

Seth T Gammon, Allison S Cohen, Adrienne L Lehnert, Daniel C Sullivan, Dariya Malyarenko, Henry Charles Manning, David A Hormuth, Heike E Daldrup-Link, Hongyu An, James D Quirk and 14 more

Open access · goldAbstract read
In one paragraph

Article in Tomography (Ann Arbor, Mich.), 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.7field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 3 citations in OpenAlex.

  1. Article
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

24 authors at 11 institutions in 1 country.

Seth T GammonDepartment of Cancer Systems Imaging, University of MD Anderson Cancer Center, 1881 E. Road, Houston, TX 77030, USA.ORCID 0000-0001-8647-0975
Allison S CohenDepartment of Cancer Systems Imaging, University of MD Anderson Cancer Center, 1881 E. Road, Houston, TX 77030, USA.
Adrienne L LehnertDepartment of Radiology, University of Washington, Seattle, WA 98105, USA.ORCID 0000-0001-5043-6820
Daniel C SullivanDepartment of Radiology and Biomedical Imaging, University of California San Francisco, San Francisco, CA 94158, USA.
Dariya MalyarenkoDepartment of Radiology, University of Michigan, Ann Arbor, MI 48108, USA.ORCID 0000-0003-0403-1501
Henry Charles ManningDepartment of Cancer Systems Imaging, University of MD Anderson Cancer Center, 1881 E. Road, Houston, TX 77030, USA.
David A HormuthOden Institute for Computational Engineering and Sciences, and Livestrong Cancer Institutes, Dell Medical School, The University of Texas at Austin, Austin, TX 78712, USA.ORCID 0000-0002-9643-1694
Heike E Daldrup-LinkDepartment of Radiology, Molecular Imaging Program at Stanford, Stanford University School of Medicine, Stanford, CA 94305, USA.
Hongyu AnMallinckrodt Institute of Radiology, Washington University, St. Louis, MO 63110, USA.
James D QuirkMallinckrodt Institute of Radiology, Washington University, St. Louis, MO 63110, USA.
Kooresh ShoghiMallinckrodt Institute of Radiology, Washington University, St. Louis, MO 63110, USA.
Mark David PagelDepartment of Cancer Systems Imaging, University of MD Anderson Cancer Center, 1881 E. Road, Houston, TX 77030, USA.ORCID 0000-0002-8109-3995
Paul E KinahanDepartment of Radiology, University of Washington, Seattle, WA 98105, USA.
Robert S MiyaokaDepartment of Radiology, University of Washington, Seattle, WA 98105, USA.
A McGarry HoughtonFred Hutchinson Cancer Center, Seattle, WA 98109, USA.
Michael T LewisLester and Sue Smith Breast Center, Dan L Duncan Comprehensive Cancer Center, Houston, TX 77030, USA.ORCID 0000-0002-6330-4007
Peder LarsonDepartment of Radiology and Biomedical Imaging, University of California San Francisco, San Francisco, CA 94158, USA.ORCID 0000-0003-4183-3634
Renuka SriramDepartment of Radiology and Biomedical Imaging, University of California San Francisco, San Francisco, CA 94158, USA.ORCID 0000-0003-3505-2479
Stephanie J BlockerCenter for In Vivo Microscopy, Department of Radiology, Duke University School of Medicine, Durham, NC 27710, USA.ORCID 0000-0002-6665-7844
Stephen PickupDepartment of Radiology, University of Pennsylvania, Philadelphia, PA 19104, USA.
Alexandra BadeaDepartment of Radiology, Duke University, Durham, NC 27708, USA.ORCID 0000-0001-6621-4560
Cristian T BadeaDepartment of Radiology, Duke University, Durham, NC 27708, USA.
Thomas E YankeelovDepartment of Biomedical Engineering, Diagnostic Medicine, and Oncology, Oden Institute for Computational Engineering and Sciences, Livestrong Cancer Institutes, The University of Texas at Austin, Austin, TX 78712, USA.ORCID 0000-0001-6201-3913
Thomas L ChenevertDepartment of Radiology, University of Michigan, Ann Arbor, MI 48108, USA.
The University of Texas MD Anderson Cancer Center · USDuke University · USMallinckrodt (United States) · USUniversity of California, San Francisco · USUniversity of Washington · USLivestrong Foundation · USUniversity of Michigan · USDan L Duncan Comprehensive Cancer CenterFred Hutch Cancer Center · USStanford University · USUniversity of Pennsylvania · US

Funding

Washington University Center for Cellular ImagingP30CA091842 · NCI · WASHINGTON UNIVERSITY · PI AIMEE S JAMES · 2001 to 2026
$128.0M
Tropism Enhanced Oncolytic Adenovirus for the Treatment of Brain TumorsP50CA127001 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI Juan Fueyo · 2008 to 2026
$41.2M
Project 4: Risk stratification for pulmonary nodules detected by CT imaging using plasma and imaging biomarkersP50CA228944 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI A McGarry Houghton · 2019 to 2026
$19.6M
WASHINGTON UNIVERSITY CO-CLINICAL IMAGING RESEARCH RESOURCEU24CA209837 · NCI · WASHINGTON UNIVERSITY · PI Li Ding, Shunqiang Li · 2017 to 2026
$6.3M
Preclinical Imaging XNAT-enabled Informatics (PIXI) CenterU24CA253531 · NCI · WASHINGTON UNIVERSITY · PI Daniel Scott Marcus, Kooresh Isaac Shoghi · 2020 to 2026
$5.1M
Preclinical imaging characterization and resource development of PDX SCNC prostate cancer murine modelsU24CA253377 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI KURHANEWICZ, JOHN, PEEHL, DONNA M. · 2020 to 2024
$3.4M
Co-Clinical Research Resource for Imaging Tumor Associated MacrophagesU24CA264298 · NCI · STANFORD UNIVERSITY · PI DALDRUP-LINK, HEIKE ELIZABETH, GATIDIS, SERGIOS · 2021 to 2025
$3.2M
INTEGRATING OMICS AND QUANTITATIVE IMAGING DATA IN CO-CLINICAL TRIALS TO PREDICT TREATMENT RESPONSE IN TRIPLE NEGATIVE BREAST CANCERU24CA226110 · NCI · BAYLOR COLLEGE OF MEDICINE · PI LEWIS, MICHAEL T., RUBIN, DANIEL L · 2019 to 2023
$3.2M
University of Michigan Quantitative Co-Clinical Imaging Research ResourceU24CA237683 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI CHENEVERT, THOMAS L, LUKER, GARY D · 2019 to 2023
$3.1M
FFNP-PET as a predictive biomarker of response to endocrine therapy approaches in advanced breast cancerR01CA273194 · NCI · WASHINGTON UNIVERSITY · PI DEHDASHTI, FARROKH, MA, CYNTHIA X · 2022 to 2025
$3.1M
Penn Quantitative MRI Resource for Pancreatic CancerU24CA231858 · NCI · UNIVERSITY OF PENNSYLVANIA · PI ODWYER, PETER J, ROSEN, MARK ALAN · 2018 to 2022
$3.0M
A Quantitative PET/CT Research Resource for Co-Clinical Imaging of Lung Cancer TherapiesU24CA264044 · NCI · UNIVERSITY OF WASHINGTON · PI HOUGHTON, A MCGARRY, KINAHAN, PAUL E. · 2021 to 2025
$2.9M
NCI NIH HHS P30 CA091842NCI NIH HHS P50 CA127001NCI NIH HHS P50 CA228944NCI NIH HHS R01 CA273194NCI NIH HHS U24 CA209837NCI NIH HHS U24 CA220245NCI NIH HHS U24 CA226110NCI NIH HHS U24 CA231858NCI NIH HHS U24 CA237683NCI NIH HHS U24 CA253377NCI NIH HHS U24 CA253531NCI NIH HHS U24 CA264044NCI NIH HHS U24 CA264298NIA NIH HHS RF1 AG070149
6 · The paper itself

Abstract

Providing method descriptions that are more detailed than currently available in typical peer reviewed journals has been identified as an actionable area for improvement. In the biochemical and cell biology space, this need has been met through the creation of new journals focused on detailed protocols and materials sourcing. However, this format is not well suited for capturing instrument validation, detailed imaging protocols, and extensive statistical analysis. Furthermore, the need for additional information must be counterbalanced by the additional time burden placed upon researchers who may be already overtasked. To address these competing issues, this white paper describes protocol templates for positron emission tomography (PET), X-ray computed tomography (CT), and magnetic resonance imaging (MRI) that can be leveraged by the broad community of quantitative imaging experts to write and self-publish protocols in protocols.io. Similar to the Structured Transparent Accessible Reproducible (STAR) or Journal of Visualized Experiments (JoVE) articles, authors are encouraged to publish peer reviewed papers and then to submit more detailed experimental protocols using this template to the online resource. Such protocols should be easy to use, readily accessible, readily searchable, considered open access, enable community feedback, editable, and citable by the author.

Indexed as

Positron-Emission TomographyTomography, X-Ray ComputedMagnetic Resonance Imagingconsortiaquantitative imagingreproducibilitytemplates

Identifiers

PMID37104131
PMCPMC10145184
OpenAlexW4361002456

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.