Evidence map›Paper›PMID 37103469›Full record

ArticleBioscience reports2023

Identification of PPT1 as a lysosomal core gene with prognostic value in hepatocellular carcinoma.

Wei Tian, Chenyu Li, Jiaqi Ren, Pengfei Li, Jingyuan Zhao, Shuai Li, Deshi Dong

Open access · goldAbstract read
In one paragraph

Article in Bioscience reports, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.9field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
  2. Review
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  4. Article
  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Wei Tian *The First Affiliated Hospital of Dalian Medical University, Dalian, China.
Chenyu Li *The First Affiliated Hospital of Dalian Medical University, Dalian, China.
Jiaqi RenThe First Affiliated Hospital of Dalian Medical University, Dalian, China.
Pengfei LiThe First Affiliated Hospital of Dalian Medical University, Dalian, China.
Jingyuan ZhaoRegenerative Medicine Center, The First Affiliated Hospital of Dalian Medical University, Dalian, China.
Shuai LiDepartment of Pharmacy, The First Affiliated Hospital of Dalian Medical University, Dalian, China.ORCID 0000-0002-3492-7176
Deshi DongDepartment of Pharmacy, The First Affiliated Hospital of Dalian Medical University, Dalian, China.
Dalian Medical University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Hepatocellular carcinoma (HCC) is the most frequent cancer worldwide with a poor prognosis. Unfortunately, there are few reports on effective biomarkers for HCC, identification of novel cancer targets is urgently needed. Lysosomes are central organelles for degradation and recycling processes in cells, and how lysosome-related genes are involved in the progression of hepatocellular carcinoma remains unclear. The aim of the present study was to identify key lysosome-related genes affecting HCC. In the present study, lysosome-related genes involved in HCC progression were screened based on the TCGA (The Cancer Genome Atlas) dataset. Differentially expressed genes (DEGs) were screened, and core lysosomal genes were obtained in combination with prognostic analysis and protein interaction networks. Two genes were associated with survival, and their prognostic value was validated by prognostic profiling. After mRNA expression validation and IHC, the palmitoyl protein thioesterase 1 (PPT1) gene was identified as an important lysosomal-related gene. We demonstrated that PPT1 promotes the proliferation of HCC cells in vitro. In addition, quantitative proteomics and bioinformatics analysis confirmed that PPT1 acts by affecting the metabolism, localization, and function of various macromolecular proteins. The present study reveals that PPT1 could be a promising therapeutic target for the treatment of HCC. These findings provided new insights into HCC and identified candidate gene prognosis signatures for HCC.

Indexed as

Carcinoma, HepatocellularLiver NeoplasmsBiomarkers, TumorComputational BiologyGene Expression ProfilingGene Expression Regulation, NeoplasticHumansLysosomesMembrane ProteinsPrognosisThiolester HydrolasesBiomarkers, TumorMembrane ProteinsPPT1 protein, humanThiolester HydrolasesbioinformaticsHepatocellular carcinomalysosomalPPT1proteomics

Identifiers

PMID37103469
PMCPMC10196150
OpenAlexW4367174604

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.