Evidence map›Paper›PMID 37103117›Full record

ArticleIn vivo (Athens, Greece)

Identification of

Yao-Ting Huang, Meng-Yin Yang, Yan-Chiao Mao, Ding-Yu Lee, Yu-Lun Kuo, Chien-Hao Tseng, Chia-Wei Liu, Yun-Ching Fu, Po-Yu Liu

Open access · diamondAbstract readCase Reports
In one paragraph

Article in In vivo (Athens, Greece). The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.6field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 3 citations in OpenAlex.

  1. Article
  2. Prosthetic valve infective endocarditis caused byEuropean heart journal. Case reports · 2024
    Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 1 country.

Yao-Ting HuangDepartment of Computer Science and Information Engineering, National Chung Cheng University, Chiayi, Taiwan, R.O.C.
Meng-Yin YangDepartment of Neurosurgery, Neurological Institute, Taichung Veterans General Hospital, Taichung, Taiwan, R.O.C.
Yan-Chiao MaoDivision of Clinical Toxicology, Department of Emergency Medicine, Taichung Veterans General Hospital, Taichung, Taiwan, R.O.C.
Ding-Yu LeeDepartment of Bioscience and Biotechnology, National Taiwan Ocean University, Keelung, Taiwan, R.O.C.
Yu-Lun KuoBiotools Co., Ltd, New Taipei, Taiwan, R.O.C.
Chien-Hao TsengDivision of Infectious Diseases, Department of Internal Medicine, Taichung Veterans General Hospital, Taichung, Taiwan, R.O.C.
Chia-Wei LiuDivision of Infectious Diseases, Department of Internal Medicine, Taichung Veterans General Hospital, Taichung, Taiwan, R.O.C.
Yun-Ching FuChildren's Medical Center, Taichung Veterans General Hospital, Taichung, Taiwan, R.O.C.; yunchingfu@gmail.com.
Po-Yu LiuDivision of Infectious Diseases, Department of Internal Medicine, Taichung Veterans General Hospital, Taichung, Taiwan, R.O.C.; pyliu@vghtc.gov.tw.
Taichung Veterans General Hospital · TWFountain Biopharma (Taiwan) · TWNational Chung Cheng University · TWNational Taiwan Ocean University · TW

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

BACKGROUND/

aimIdentifying pathogens with culture-negative pyogenic spondylitis is difficult. Shotgun metagenomic sequencing is an unbiased and culture-free approach in the diagnosis of infectious diseases. There are, however, a variety of contaminating factors that can confound the precision of metagenomic sequencing. CASE REPORT: In a 65-year-old man suffering from culture-negative L3-5 spondylitis, metagenomics was applied to facilitate the diagnosis. The patient underwent percutaneous endoscopic lumbar discectomy. We applied metagenomic sequencing with a robust contamination-free protocol to the bone biopsy. By comparing the abundance for each taxon between the replicates and negative controls, we reliably identified Cutibacterium modestum as having a statistically higher abundance in all replicates. The patient's antibiotic therapy was switched to penicillin and doxycycline based upon the resistome analysis; the patient fully recovered.

conclusionThis application of next-generation sequencing provides a new perspective in the clinical approach to spinal osteomyelitis and illustrates the potential of this technique in rapid etiological diagnosis.

Indexed as

Diskectomy, PercutaneousIntervertebral Disc DisplacementSpondylitisAgedHigh-Throughput Nucleotide SequencingHumansLumbar VertebraeMalePropionibacteriaceaeantibiotic-resistant genesculture-negative pyogenic spondylitisCutibacterium modestumresistomeshotgun metagenomic sequencing

Identifiers

PMID37103117
PMCPMC10188021
OpenAlexW4367174102

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.