Evidence map›Paper›PMID 37102793›Full record

ArticleJournal of bone and mineral research : the official journal of the American Society for Bone and Mineral Research2023

A Laplace-Hamming Binarization Approach for Second-Generation HR-pQCT Rescues Fine Feature Segmentation.

Saghi Sadoughi, Aditya Subramanian, Gabby Ramil, Andrew J Burghardt, Galateia J Kazakia

Open access · hybridAbstract read
In one paragraph

Article in Journal of bone and mineral research : the official journal of the American Society for Bone and Mineral Research, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
3.7field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 15 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. The impact of segmentation approach on HR-pQCT microarchitectural and biomechanical metrics depends on bone structure.Journal of bone and mineral research : the official journal of the American Society for Bone and Mineral Research · 2025
    Article
  6. Time-lapse HR-pQCT reliably assesses and monitors local bone turnover in patients with chronic kidney disease.Journal of bone and mineral research : the official journal of the American Society for Bone and Mineral Research · 2025
    Article
  7. Article
  8. Article
  9. Article
  10. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Saghi SadoughiBone Quality Research Lab, Department of Radiology and Biomedical Imaging, University of California, San Francisco, CA, USA.ORCID 0000-0003-0308-9189
Aditya SubramanianBone Quality Research Lab, Department of Radiology and Biomedical Imaging, University of California, San Francisco, CA, USA.
Gabby RamilBone Quality Research Lab, Department of Radiology and Biomedical Imaging, University of California, San Francisco, CA, USA.
Andrew J BurghardtBone Quality Research Lab, Department of Radiology and Biomedical Imaging, University of California, San Francisco, CA, USA.
Galateia J KazakiaBone Quality Research Lab, Department of Radiology and Biomedical Imaging, University of California, San Francisco, CA, USA.
University of California, San Francisco · US

Funding

Skeletal Biology and Biomechanics (SBB) CoreP30AR075055 · NIAMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI EDWARD C HSIAO · 2019 to 2026
$7.1M
Bone quality by vQCT and HR-pQCT: translation to multi-center clinical researchR01AR060700 · NIAMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI BURGHARDT, ANDREW JOHN, LANG, THOMAS F · 2011 to 2014
$2.0M
In vivo imaging of cortical porosity in the peripheral skeletonK01AR056734 · NIAMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI KAZAKIA, GALATEIA J · 2009 to 2013
$594k
High Resolution peripheral Quantitative Computed Tomography (HR-pQCT) in vivo human scanner, Scanco Medical AG.S10OD021803 · OD · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI KAZAKIA, GALATEIA J · 2019 to 2019
$237k
NIAMS NIH HHS K01 AR056734NIAMS NIH HHS P30 AR075055NIAMS NIH HHS R01 AR060700NIH HHS S10 OD021803
6 · The paper itself

Abstract

Although second-generation high-resolution peripheral quantitative computed tomography (XCTII) provides the highest-resolution in vivo bone microstructure assessment, the manufacturer's standard image processing protocol omits fine features in both trabecular and cortical compartments. To optimize fine structure segmentation, we implemented a binarization approach based on a Laplace-Hamming (LH) segmentation and documented the reproducibility and accuracy of XCTII structure segmentation using both the standard Gaussian-based binarization and the proposed LH segmentation approach. To evaluate reproducibility, 20 volunteers (9 women, 11 men; aged 23-75 years) were recruited, and three repeat scans of the radii and tibias were acquired using the manufacturer's standard in vivo protocol. To evaluate accuracy, cadaveric structure phantoms (14 radii, 6 tibias) were scanned on XCTII using the same standard in vivo protocol and on μCT at 24.5 μm resolution. XCTII images were analyzed twice-first, with the manufacturer's standard patient evaluation protocol and, second, with the proposed LH segmentation approach. The LH approach rescued fine features evident in the grayscale images but omitted or overrepresented (thickened) by the standard approach. The LH approach significantly reduced error in trabecular volume fraction (BV/TV) and thickness (Tb.Th) compared with the standard approach; however, higher error was introduced for trabecular separation (Tb.Sp). The LH approach improved the correlation between XCTII and μCT for cortical porosity (Ct.Po) and significantly reduced error in cortical pore diameter (Ct.Po.Dm) compared with the standard approach. The LH approach resulted in improved precision compared with the standard approach for BV/TV, Tb.Th, Ct.Po, and Ct.Po.Dm at the radius and for Ct.Po at the tibia. Our results suggest that the proposed LH approach produces substantially improved binary masks, reduces proportional bias, and provides greater accuracy and reproducibility in important outcome metrics, all due to more accurate segmentation of the fine features in both trabecular and cortical compartments. © 2023 The Authors. Journal of Bone and Mineral Research published by Wiley Periodicals LLC on behalf of American Society for Bone and Mineral Research (ASBMR).

Indexed as

Bone and BonesTomography, X-Ray ComputedBone DensityFemaleHumansImage Processing, Computer-AssistedMaleRadiusReproducibility of ResultsTibiaACCURACYGAUSSIAN BINARIZATIONHR-PQCTLAPLACE-HAMMING BINARIZATIONREPRODUCIBILITY

Identifiers

PMID37102793
PMCPMC10524566
OpenAlexW4367174197

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.