Evidence map›Paper›PMID 37102635›Full record

ArticleNucleic acids research2023

Dynamics of release factor recycling during translation termination in bacteria.

Arjun Prabhakar, Michael Y Pavlov, Jingji Zhang, Gabriele Indrisiunaite, Jinfan Wang, Michael R Lawson, Måns Ehrenberg, Joseph D Puglisi

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.5field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 3 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Arjun PrabhakarDepartment of Structural Biology, Stanford University School of Medicine, Stanford, CA 94305-5126, USA.
Michael Y PavlovDepartment of Cell and Molecular Biology, Biomedical Center, Box 596, Uppsala University, Uppsala, Sweden.ORCID 0000-0002-3794-1870
Jingji ZhangDepartment of Structural Biology, Stanford University School of Medicine, Stanford, CA 94305-5126, USA.
Gabriele IndrisiunaiteDepartment of Cell and Molecular Biology, Biomedical Center, Box 596, Uppsala University, Uppsala, Sweden.
Jinfan WangDepartment of Structural Biology, Stanford University School of Medicine, Stanford, CA 94305-5126, USA.
Michael R LawsonDepartment of Structural Biology, Stanford University School of Medicine, Stanford, CA 94305-5126, USA.
Måns EhrenbergDepartment of Cell and Molecular Biology, Biomedical Center, Box 596, Uppsala University, Uppsala, Sweden.
Joseph D PuglisiDepartment of Structural Biology, Stanford University School of Medicine, Stanford, CA 94305-5126, USA.ORCID 0000-0001-9268-5112
Stanford University · USUppsala University · SE

Funding

STRUCTURAL BASIS FOR RIBOSOME FUNCTIONSR01GM051266 · NIGMS · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI PUGLISI, JOSEPH D · 1995 to 2021
$7.7M
Molecular Biophysics Training Program at StanfordT32GM008294 · NIGMS · STANFORD UNIVERSITY · PI HUANG, KERWYN C. · 1989 to 2019
$7.4M
Dynamics of TranslationR35GM145306 · NIGMS · STANFORD UNIVERSITY · PI JOSEPH D PUGLISI · 2022 to 2026
$3.8M
Dynamics of eukaryotic translation initiation and its controlR01GM113078 · NIGMS · STANFORD UNIVERSITY · PI PUGLISI, JOSEPH D · 2016 to 2021
$2.9M
NIGMS NIH HHS R01 GM051266NIGMS NIH HHS R01 GM113078NIGMS NIH HHS R35 GM145306NIGMS NIH HHS T32 GM008294
6 · The paper itself

Abstract

In bacteria, release of newly synthesized proteins from ribosomes during translation termination is catalyzed by class-I release factors (RFs) RF1 or RF2, reading UAA and UAG or UAA and UGA codons, respectively. Class-I RFs are recycled from the post-termination ribosome by a class-II RF, the GTPase RF3, which accelerates ribosome intersubunit rotation and class-I RF dissociation. How conformational states of the ribosome are coupled to the binding and dissociation of the RFs remains unclear and the importance of ribosome-catalyzed guanine nucleotide exchange on RF3 for RF3 recycling in vivo has been disputed. Here, we profile these molecular events using a single-molecule fluorescence assay to clarify the timings of RF3 binding and ribosome intersubunit rotation that trigger class-I RF dissociation, GTP hydrolysis, and RF3 dissociation. These findings in conjunction with quantitative modeling of intracellular termination flows reveal rapid ribosome-dependent guanine nucleotide exchange to be crucial for RF3 action in vivo.

Indexed as

BacteriaPeptide Chain Termination, TranslationalPeptide Termination FactorsGuanosine TriphosphateProtein BindingGuanosine TriphosphatePeptide Termination Factors

Identifiers

PMID37102635
PMCPMC10287982
OpenAlexW4367174939

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.