ArticleBMC plant biology2023
MDSi: Multi-omics Database for Setaria italica.
Article in BMC plant biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.
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Who cites it
16 citing papers in PubMed, 29 citations in OpenAlex.
- A domestication gene links plant architecture and nitrogen metabolism to enhance yield in foxtail millet.Nature communications · 2026Article
- Phyllosphere microbes in foxtail millet primarily affect quality by modulating coloration and bitter compounds.Microbiome · 2025Article
- Toward improving multiomic research in understudied cereals.Nature genetics · 2025Review
- Article
- Tissue-Specific Expression Analysis and Functional Validation ofPlants (Basel, Switzerland) · 2025Article
- Pan-Genome-Based Characterization of the SRS Transcription Factor Family in Foxtail Millet.Plants (Basel, Switzerland) · 2025Article
- Millets for a sustainable future.Journal of experimental botany · 2025Review
- Foxtail millet research in supporting climate change resilience efforts: Bibliometric analysis and focused literature review.Heliyon · 2025Review
- Genome-wide identification ofFrontiers in plant science · 2025Article
- Genomic resources, opportunities, and prospects for accelerated improvement of millets.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2024Review
- Integrating dynamic high-throughput phenotyping and genetic analysis to monitor growth variation in foxtail millet.Plant methods · 2024Article
- Review
- Assembly and comparative analysis of the first complete mitochondrial genome of Setaria italica.Planta · 2024Article
- Article
- Article
- Genome-wide identification and expression profiling analysis ofFrontiers in plant science · 2023Article
Corrections and comments
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Authors and funding
9 authors at 3 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundFoxtail millet (Setaria italica) harbors the small diploid genome (~ 450 Mb) and shows the high inbreeding rate and close relationship to several major foods, feed, fuel and bioenergy grasses. Previously, we created a mini foxtail millet, xiaomi, with an Arabidopsis-like life cycle. The de novo assembled genome data with high-quality and an efficient Agrobacterium-mediated genetic transformation system made xiaomi an ideal C
resultsHere, we built a Multi-omics Database for Setaria italica (MDSi, http://sky.sxau.edu.cn/MDSi.htm ), that contains xiaomi genome of 161,844 annotations, 34,436 protein-coding genes and their expression information in 29 different tissues of xiaomi (6) and JG21 (23) samples that can be showed as an Electronic Fluorescent Pictograph (xEFP) in-situ. Moreover, the whole-genome resequencing (WGS) data of 398 germplasms, including 360 foxtail millets and 38 green foxtails and the corresponding metabolic data were available in MDSi. The SNPs and Indels of these germplasms were called in advance and can be searched and compared in an interactive manner. Common tools including BLAST, GBrowse, JBrowse, map viewer, and data downloads were implemented in MDSi.
conclusionThe MDSi constructed in this study integrated and visualized data from three levels of genomics, transcriptomics and metabolomics, and also provides information on the variation of hundreds of germplasm resources that can satisfies the mainstream requirements and supports the corresponding research community.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.