Evidence map›Paper›PMID 37100774›Full record

ArticleNature communications2023

Bridging clinic and wildlife care with AI-powered pan-species computational pathology.

Khalid AbdulJabbar, Simon P Castillo, Katherine Hughes, Hannah Davidson, Amy M Boddy, Lisa M Abegglen, Lucia Minoli, Selina Iussich, Elizabeth P Murchison, Trevor A Graham and 5 more

Abstract read
In one paragraph

Article in Nature communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Khalid AbdulJabbar *Centre for Evolution and Cancer, The Institute of Cancer Research, London, UK.
Simon P Castillo *Centre for Evolution and Cancer, The Institute of Cancer Research, London, UK.ORCID 0000-0002-0606-2160
Katherine HughesDepartment of Veterinary Medicine, University of Cambridge, Madingley Road, Cambridge, UK.ORCID 0000-0002-3331-1249
Hannah DavidsonZoological Society of London, London, UK.
Amy M BoddyDepartment of Anthropology, University of California Santa Barbara, Santa Barbara, CA, USA.ORCID 0000-0002-7990-2415
Lisa M AbegglenDepartment of Pediatrics and Huntsman Cancer Institute, University of Utah, Salt Lake City, UT, USA.ORCID 0000-0003-3607-3001
Lucia MinoliDepartment of Veterinary Sciences, University of Turin, 10095, Grugliasco, Italy.
Selina IussichDepartment of Veterinary Sciences, University of Turin, 10095, Grugliasco, Italy.
Elizabeth P MurchisonDepartment of Veterinary Medicine, University of Cambridge, Madingley Road, Cambridge, UK.ORCID 0000-0001-7462-8907
Trevor A GrahamCentre for Evolution and Cancer, The Institute of Cancer Research, London, UK.ORCID 0000-0001-9582-1597
Simon SpiroZoological Society of London, London, UK.
Carlo C MaleyArizona Cancer Evolution Center, Biodesign Institute and School of Life Sciences, Arizona State University, Tempe, AZ, USA.ORCID 0000-0002-0745-7076
Luca AresuDepartment of Veterinary Sciences, University of Turin, 10095, Grugliasco, Italy.ORCID 0000-0002-7893-1740
Chiara PalmieriSchool of Veterinary Science, The University of Queensland, 4343, Gatton, QLD, Australia.
Yinyin YuanCentre for Evolution and Cancer, The Institute of Cancer Research, London, UK. yyuan6@mdanderson.org.ORCID 0000-0002-8556-4707

Funding

Molecular, Cellular and Tissue Characterization UnitU2CCA233254 · NCI · DUKE UNIVERSITY · PI HWANG, E.SHELLEY, MALEY, CARLO · 2018 to 2023
$11.4M
The Role of the Microbiome in Cancer Suppression and Susceptibility Across SpeciesU54CA217376 · NCI · ARIZONA STATE UNIVERSITY-TEMPE CAMPUS · PI MALEY, CARLO · 2018 to 2022
$8.6M
Modeling Neoplastic Progression in Barrett's Esophagus - Renewal -2R01CA140657 · NCI · WISTAR INSTITUTE · PI Carlo Maley · 2009 to 2026
$5.0M
(PQC3) Genomic Diversity and Microenvironment as Drivers of Metastasis in DCISR01CA185138 · NCI · DUKE UNIVERSITY · PI HWANG, E.SHELLEY, MALEY, CARLO · 2014 to 2017
$2.0M
Cancer Research UK 19771Cancer Research UK 21808Cancer Research UK C25858/A28592Cancer Research UK C45982/A21808Cancer Research UK C56167/A29363NCI NIH HHS R01 CA140657NCI NIH HHS R01 CA185138NCI NIH HHS U2C CA233254NCI NIH HHS U54 CA217376
6 · The paper itself

Abstract

Cancers occur across species. Understanding what is consistent and varies across species can provide new insights into cancer initiation and evolution, with significant implications for animal welfare and wildlife conservation. We build a pan-species cancer digital pathology atlas (panspecies.ai) and conduct a pan-species study of computational comparative pathology using a supervised convolutional neural network algorithm trained on human samples. The artificial intelligence algorithm achieves high accuracy in measuring immune response through single-cell classification for two transmissible cancers (canine transmissible venereal tumour, 0.94; Tasmanian devil facial tumour disease, 0.88). In 18 other vertebrate species (mammalia = 11, reptilia = 4, aves = 2, and amphibia = 1), accuracy (range 0.57-0.94) is influenced by cell morphological similarity preserved across different taxonomic groups, tumour sites, and variations in the immune compartment. Furthermore, a spatial immune score based on artificial intelligence and spatial statistics is associated with prognosis in canine melanoma and prostate tumours. A metric, named morphospace overlap, is developed to guide veterinary pathologists towards rational deployment of this technology on new samples. This study provides the foundation and guidelines for transferring artificial intelligence technologies to veterinary pathology based on understanding of morphological conservation, which could vastly accelerate developments in veterinary medicine and comparative oncology.

Indexed as

Animals, WildProstatic NeoplasmsAnimalsArtificial IntelligenceDogsHumansMaleNeural Networks, ComputerPan troglodytes

Identifiers

PMID37100774
PMCPMC10133243

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.