Evidence map›Paper›PMID 37100456›Full record

ArticleThe Journal of antimicrobial chemotherapy2023

Whole-genome sequencing confirms a persistent candidaemia clonal outbreak due to multidrug-resistant Candida parapsilosis.

Farnaz Daneshnia, Süleyha Hilmioğlu-Polat, Macit Ilkit, Diego Fuentes, Lisa Lombardi, Ulrike Binder, Jakob Scheler, Ferry Hagen, Michael K Mansour, Geraldine Butler and 3 more

Abstract read
In one paragraph

Article in The Journal of antimicrobial chemotherapy, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed.

  1. Profound cell wall remodeling inMicrobiology spectrum · 2026
    Article
  2. Review
  3. Article
  4. Article
  5. Review
  6. Antimicrobial agents and chemotherapy · 2025
    Article
  7. Heterogeneity ofMicrobiology spectrum · 2025
    Article
  8. Review
  9. Emerging fluconazole-resistantFrontiers in microbiology · 2025
    Article
  10. Threats from theMicrobiology and molecular biology reviews : MMBR · 2024
    Review
  11. Article
  12. Review
  13. Article
  14. Invasive candidiasis.Nature reviews. Disease primers · 2024
    Review
  15. Pathogens (Basel, Switzerland) · 2024
    Review
  16. Article
  17. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Farnaz DaneshniaDivision of Infectious Diseases, Massachusetts General Hospital, Boston, MA 02114USA.
Süleyha Hilmioğlu-PolatDepartment of Medical Microbiology, Ege University Faculty of Medicine, Izmir, Turkey.
Macit IlkitDivision of Mycology, Faculty of Medicine, University of Çukurova, Adana, Turkey.ORCID 0000-0002-1174-4182
Diego FuentesComparative Genomics group, Life Sciences department, Barcelona Supercomputing Center (BSC-CNS), Carrer de Jordi Girona, 29, 31, 08034 Barcelona, Spain.ORCID 0000-0002-9977-6786
Lisa LombardiSchool of Biomolecular and Biomedical Science, Conway Institute, University College Dublin, Belfield, Dublin, Ireland.
Ulrike BinderMedical University Innsbruck, Institute of Hygiene and Medical Microbiology, Schöpfstrasse 41, 6020 Innsbruck, Austria.
Jakob SchelerMedical University Innsbruck, Institute of Hygiene and Medical Microbiology, Schöpfstrasse 41, 6020 Innsbruck, Austria.
Ferry HagenInstitute of Biodiversity and Ecosystem Dynamics (IBED), University of Amsterdam, Amsterdam, 1012 WX, The Netherlands.ORCID 0000-0002-5622-1916
Michael K MansourDivision of Infectious Diseases, Massachusetts General Hospital, Boston, MA 02114USA.
Geraldine ButlerSchool of Biomolecular and Biomedical Science, Conway Institute, University College Dublin, Belfield, Dublin, Ireland.ORCID 0000-0002-1770-5301
Cornelia Lass-FlörlMedical University Innsbruck, Institute of Hygiene and Medical Microbiology, Schöpfstrasse 41, 6020 Innsbruck, Austria.
Toni GabaldonComparative Genomics group, Life Sciences department, Barcelona Supercomputing Center (BSC-CNS), Carrer de Jordi Girona, 29, 31, 08034 Barcelona, Spain.
Amir ArastehfarDivision of Infectious Diseases, Massachusetts General Hospital, Boston, MA 02114USA.

Funding

The role of spleen tyrosine kinase (syk) in neutrophil responses to pathogenic fungi.R01AI132638 · NIAID · MASSACHUSETTS GENERAL HOSPITAL · PI MANSOUR, MICHAEL K · 2018 to 2021
$1.6M
NIAID NIH HHS R01 AI132638
6 · The paper itself

Abstract

objectivesAlthough perceived as a rare clinical entity, recent studies have noted the emergence of MDR C. parapsilosis (MDR-Cp) isolates from single patients (resistant to both azole and echinocandins). We previously reported a case series of MDR-Cp isolates carrying a novel FKS1R658G mutation. Herein, we identified an echinocandin-naive patient infected with MDR-Cp a few months after the previously described isolates. WGS and CRISPR-Cas9 editing were used to explore the origin of the new MDR-Cp isolates, and to determine if the novel mutation confers echinocandin resistance.

methodsWGS was applied to assess the clonality of these isolates and CRISPR-Cas9 editing and a Galleria mellonella model were used to examine whether FKS1R658G confers echinocandin resistance.

resultsFluconazole treatment failed, and the patient was successfully treated with liposomal amphotericin B (LAMB). WGS proved that all historical and novel MDR-Cp strains were clonal and distant from the fluconazole-resistant outbreak cluster in the same hospital. CRISPR-Cas9 editing and G. mellonella virulence assays confirmed that FKS1R658G confers echinocandin resistance in vitro and in vivo. Interestingly, the FKS1R658G mutant showed a very modest fitness cost compared with the parental WT strain, consistent with the persistence of the MDR-Cp cluster in our hospital.

conclusionsOur study showcases the emergence of MDR-Cp isolates as a novel threat in clinical settings, which undermines the efficacy of the two most widely used antifungal drugs against candidiasis, leaving only LAMB as a last resort. Additionally, surveillance studies and WGS are warranted to effectively establish infection control and antifungal stewardship strategies.

Indexed as

Antifungal AgentsCandidemiaCandida parapsilosisDrug Resistance, FungalEchinocandinsFluconazoleMicrobial Sensitivity TestsAntifungal AgentsEchinocandinsFluconazole

Identifiers

PMID37100456
PMCPMC10232251

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.