Evidence map›Paper›PMID 37100288›Full record

ArticleThe Journal of biological chemistry2023

Structures of Get3d reveal a distinct architecture associated with the emergence of photosynthesis.

Alexandra N Barlow, M S Manu, Shyam M Saladi, Paul T Tarr, Yashpal Yadav, Aye M M Thinn, Yun Zhu, Arthur D Laganowsky, William M Clemons, Sureshkumar Ramasamy

Open access · goldAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.8field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

Alexandra N BarlowDivision of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, California, USA.
M S ManuDivision of Biochemical Sciences, CSIR-National Chemical Laboratory, Pune, India.
Shyam M SaladiDivision of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, California, USA.
Paul T TarrHoward Hughes Medical Institute and Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, California, USA.
Yashpal YadavDivision of Biochemical Sciences, CSIR-National Chemical Laboratory, Pune, India.
Aye M M ThinnDivision of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, California, USA.
Yun ZhuDepartment of Chemistry, Texas A&M University, College Station, Texas, USA.
Arthur D LaganowskyDepartment of Chemistry, Texas A&M University, College Station, Texas, USA.
William M ClemonsDivision of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, California, USA. Electronic address: clemons@caltech.edu.
Sureshkumar RamasamyDivision of Biochemical Sciences, CSIR-National Chemical Laboratory, Pune, India. Electronic address: sureshxtal@gmail.com.
California Institute of Technology · USNational Chemical Laboratory · INTexas A&M University · US

Funding

PREDOCTORAL TRAINING IN BIOLOGY AND CHEMISTRYT32GM007616 · NIGMS · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI STERNBERG, PAUL WARREN · 1985 to 2019
$22.9M
NIH Pioneer AwardDP1GM105385 · NIGMS · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI CLEMONS, WILLIAM M. · 2012 to 2015
$3.3M
A New Pradigm for the Rational Expression of Integral Membrane ProteinsR01GM125063 · NIGMS · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI CLEMONS, WILLIAM M., MILLER, THOMAS FRANCIS · 2017 to 2020
$1.5M
Targeting of tail-anchored membrane proteins by the Get pathway.R01GM097572 · NIGMS · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI CLEMONS, WILLIAM M. · 2011 to 2015
$1.5M
Developing new tools to probe membrane protein-lipid interactions for biomedical applicationsR01GM139876 · NIGMS · TEXAS A&M UNIVERSITY · PI LAGANOWSKY, ARTHUR D · 2021 to 2024
$1.2M
Howard Hughes Medical InstituteNIGMS NIH HHS DP1 GM105385NIGMS NIH HHS R01 GM097572NIGMS NIH HHS R01 GM125063NIGMS NIH HHS R01 GM139876NIGMS NIH HHS T32 GM007616
6 · The paper itself

Abstract

Homologs of the protein Get3 have been identified in all domains yet remain to be fully characterized. In the eukaryotic cytoplasm, Get3 delivers tail-anchored (TA) integral membrane proteins, defined by a single transmembrane helix at their C terminus, to the endoplasmic reticulum. While most eukaryotes have a single Get3 gene, plants are notable for having multiple Get3 paralogs. Get3d is conserved across land plants and photosynthetic bacteria and includes a distinctive C-terminal α-crystallin domain. After tracing the evolutionary origin of Get3d, we solve the Arabidopsis thaliana Get3d crystal structure, identify its localization to the chloroplast, and provide evidence for a role in TA protein binding. The structure is identical to that of a cyanobacterial Get3 homolog, which is further refined here. Distinct features of Get3d include an incomplete active site, a "closed" conformation in the apo-state, and a hydrophobic chamber. Both homologs have ATPase activity and are capable of binding TA proteins, supporting a potential role in TA protein targeting. Get3d is first found with the development of photosynthesis and conserved across 1.2 billion years into the chloroplasts of higher plants across the evolution of photosynthesis suggesting a role in the homeostasis of photosynthetic machinery.

Indexed as

ArabidopsisArabidopsis ProteinsPhotosynthesisAdenosine TriphosphatasesEmbryophytaEndoplasmic ReticulumGuanine Nucleotide Exchange FactorsAdenosine TriphosphatasesArabidopsis ProteinsGuanine Nucleotide Exchange FactorscyanobacteriaGet3GET pathwayNTPaseplantprotein structureprotein targetingstructural biologytail-anchored protein

Identifiers

PMID37100288
PMCPMC10248533
OpenAlexW4366825012

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.