Evidence map›Paper›PMID 37100056›Full record

ArticleCell metabolism2023

Integrative genetic analysis identifies FLVCR1 as a plasma-membrane choline transporter in mammals.

Timothy C Kenny, Artem Khan, Yeeun Son, Lishu Yue, Søren Heissel, Anurag Sharma, H Amalia Pasolli, Yuyang Liu, Eric R Gamazon, Hanan Alwaseem and 2 more

Open access · greenAbstract read
In one paragraph

Article in Cell metabolism, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 48 papers.

0numbers the graph read from it
0cells of the map it votes in
48citing papers in PubMed
21.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

48 citing papers in PubMed, 70 citations in OpenAlex.

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  6. More than a ring: the emerging role of heme in angiogenesis.Cell communication and signaling : CCS · 2026
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 1 country.

Timothy C KennyLaboratory of Metabolic Regulation and Genetics, The Rockefeller University, New York, NY, USA.
Artem KhanLaboratory of Metabolic Regulation and Genetics, The Rockefeller University, New York, NY, USA.
Yeeun SonStructural Biology Program, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Lishu YueThe David Rockefeller Graduate Program in Bioscience, The Rockefeller University, New York, NY, USA.
Søren HeisselProteomics Resource Center, The Rockefeller University, New York, NY, USA.
Anurag SharmaElectron Microscopy Resource Center, The Rockefeller University, New York, NY, USA.
H Amalia PasolliElectron Microscopy Resource Center, The Rockefeller University, New York, NY, USA.
Yuyang LiuLaboratory of Metabolic Regulation and Genetics, The Rockefeller University, New York, NY, USA.
Eric R GamazonDivision of Genetic Medicine, Department of Medicine, Vanderbilt University Medical Center, Nashville, TN, USA.
Hanan AlwaseemProteomics Resource Center, The Rockefeller University, New York, NY, USA.
Richard K HiteStructural Biology Program, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Kıvanç BirsoyLaboratory of Metabolic Regulation and Genetics, The Rockefeller University, New York, NY, USA. Electronic address: kbirsoy@rockefeller.edu.
Rockefeller University · USMemorial Sloan Kettering Cancer Center · USVanderbilt University Medical Center · US

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Nicholas D Socci · 1985 to 2026
$347.4M
Identification of metabolic regulators of glycerolipid synthesis and storageR01DK123323 · NIDDK · ROCKEFELLER UNIVERSITY · PI BIRSOY, KIVANC · 2019 to 2023
$2.5M
Functional Genomics: A Phenome-wide SurveyR35HG010718 · NHGRI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI GAMAZON, ERIC R · 2019 to 2023
$2.2M
Advancing Multi-Omics and Electronic Health Records Computational MethodologiesR01HG011138 · NHGRI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI GAMAZON, ERIC R · 2020 to 2024
$1.6M
Understanding the regulation of ER GPATs to control glycerolipid synthesis in diseaseF32DK127836 · NIDDK · ROCKEFELLER UNIVERSITY · PI KENNY, TIMOTHY COLE · 2021 to 2023
$202k
NCI NIH HHS P30 CA008748NHGRI NIH HHS R01 HG011138NHGRI NIH HHS R35 HG010718NIDDK NIH HHS F32 DK127836NIDDK NIH HHS R01 DK123323
6 · The paper itself

Abstract

Genome-wide association studies (GWASs) of serum metabolites have the potential to uncover genes that influence human metabolism. Here, we combined an integrative genetic analysis that associates serum metabolites to membrane transporters with a coessentiality map of metabolic genes. This analysis revealed a connection between feline leukemia virus subgroup C cellular receptor 1 (FLVCR1) and phosphocholine, a downstream metabolite of choline metabolism. Loss of FLVCR1 in human cells strongly impairs choline metabolism due to the inhibition of choline import. Consistently, CRISPR-based genetic screens identified phospholipid synthesis and salvage machinery as synthetic lethal with FLVCR1 loss. Cells and mice lacking FLVCR1 exhibit structural defects in mitochondria and upregulate integrated stress response (ISR) through heme-regulated inhibitor (HRI) kinase. Finally, Flvcr1 knockout mice are embryonic lethal, which is partially rescued by choline supplementation. Altogether, our findings propose FLVCR1 as a major choline transporter in mammals and provide a platform to discover substrates for unknown metabolite transporters.

Indexed as

Genome-Wide Association StudyReceptors, VirusAnimalsCholineHumansMammalsMembrane Transport ProteinsMiceMutationCholinecholine transporterFLVCR1 protein, humanMembrane Transport ProteinsReceptors, ViruscholineFLVCR1metabolismmitochondriaPCARPphosphatidylcholine

Identifiers

PMID37100056
PMCPMC10367582
OpenAlexW4366993029

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.