Evidence map›Paper›PMID 37099616›Full record

ArticleMicrobial genomics2023

Taking hospital pathogen surveillance to the next level.

Guido Werner, Natacha Couto, Edward J Feil, Angela Novais, Kristin Hegstad, Benjamin P Howden, Alexander W Friedrich, Sandra Reuter

Abstract readEditorial
In one paragraph

Article in Microbial genomics, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Article
  2. Article
  3. A comparative review of three cloud-based platforms for microbial whole genome sequencing analysis.Antimicrobial stewardship & healthcare epidemiology : ASHE · 2026
    Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Multidrug-ResistantMicroorganisms · 2024
    Article
  11. Whole Genome Sequencing: Applications in Clinical Bacteriology.Medical principles and practice : international journal of the Kuwait University, Health Science Centre · 2024
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Guido WernerDepartment of Infectious Diseases, Robert Koch Institute, Wernigerode Branch, Germany.
Natacha CoutoThe Milner Centre for Evolution, Department of Biology and Biochemistry, University of Bath, Bath, UK.
Edward J FeilThe Milner Centre for Evolution, Department of Biology and Biochemistry, University of Bath, Bath, UK.
Angela NovaisUCIBIO-Applied Molecular Biosciences Unit, REQUIMTE, Laboratory of Microbiology, Faculty of Pharmacy, University of Porto, 4050-313 Porto, Portugal.
Kristin HegstadNorwegian National Advisory Unit on Detection of Antimicrobial Resistance, Department of Microbiology and Infection Control, University Hospital of North Norway, Tromsø, Norway.
Benjamin P HowdenMicrobiological Diagnostic Unit Public Health Laboratory, Department of Microbiology and Immunology, The University of Melbourne at The Peter Doherty Institute for Infection and Immunity, Melbourne, Australia.
Alexander W FriedrichMedical Faculty, University Hospital, Westphalia-Wilhelms-University Muenster, Germany.
Sandra ReuterInstitute for Infection Prevention and Hospital Hygiene, University Hospital Freiburg, Germany.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

High-throughput bacterial genomic sequencing and subsequent analyses can produce large volumes of high-quality data rapidly. Advances in sequencing technology, with commensurate developments in bioinformatics, have increased the speed and efficiency with which it is possible to apply genomics to outbreak analysis and broader public health surveillance. This approach has been focused on targeted pathogenic taxa, such as

Indexed as

Cross InfectionMethicillin-Resistant Staphylococcus aureusVancomycin-Resistant EnterococciHospitalsHumansKlebsiella pneumoniaeantimicrobial resistancecarbapenem resistanceMRSAnosocomial pathogenVRE

Identifiers

PMID37099616
PMCPMC10210943

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.