Evidence map›Paper›PMID 37099532›Full record

ArticlePloS one2023

Disposable platform for bacterial lysis and nucleic acid amplification based on a single USB-powered printed circuit board.

Kamal G Shah, Mike Roller, Sujatha Kumar, Steven Bennett, Erin Heiniger, Katriel Looney, Joshua Buser, Joshua D Bishop, Paul Yager

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.8field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 7 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Kamal G ShahDepartment of Bioengineering, University of Washington, Seattle, Washington, United States of America.
Mike RollerDepartment of Bioengineering, University of Washington, Seattle, Washington, United States of America.
Sujatha KumarDepartment of Bioengineering, University of Washington, Seattle, Washington, United States of America.ORCID 0000-0003-2923-0830
Steven BennettDepartment of Bioengineering, University of Washington, Seattle, Washington, United States of America.
Erin HeinigerDepartment of Bioengineering, University of Washington, Seattle, Washington, United States of America.ORCID 0000-0002-6097-1429
Katriel LooneyDepartment of Bioengineering, University of Washington, Seattle, Washington, United States of America.
Joshua BuserDepartment of Bioengineering, University of Washington, Seattle, Washington, United States of America.
Joshua D BishopDepartment of Bioengineering, University of Washington, Seattle, Washington, United States of America.ORCID 0000-0002-2679-0851
Paul YagerDepartment of Bioengineering, University of Washington, Seattle, Washington, United States of America.
University of Washington · US

Funding

HIVAcute: rapid sample-to-result self-testing for HIV RNAR33AI147354 · NIAID · UNIVERSITY OF WASHINGTON · PI YAGER, PAUL · 2022 to 2023
$1.5M
HIVAcute: rapid sample-to-result self-testing for HIV RNAR61AI147354 · NIAID · UNIVERSITY OF WASHINGTON · PI YAGER, PAUL · 2019 to 2021
$1.3M
NIAID NIH HHS R33 AI147354NIAID NIH HHS R61 AI147354
6 · The paper itself

Abstract

Recent advances in electronics and microfluidics have enabled several research groups to develop fully integrated, sample-to-result isothermal nucleic acid amplification test (NAAT) platforms for the point of care. However, high component counts and costs have limited translation of these platforms beyond the clinic to low-resource settings-including homes. Many NAATs include complex, multi-component heater electronics based on flex circuits or multiple printed circuit boards (PCBs) to support essential NAAT steps such as lysis, sample deactivation, and nucleic acid amplification. In contrast, current commercial assays for home use, such as those for pregnancy or ovulation that include electronics, typically have just one onboard PCB. This work describes a generalizable strategy to integrate all heaters and the electronics needed to control them onto a single low-cost, USB-powered PCB. We built a multiplexable disposable NAAT ("MD NAAT") platform that applies these principles, integrating small-area heaters that heat small regions to near-boiling (for pathogen lysis and deactivation) and large-area heaters (for amplification) on the same PCB. We show that both classes of heaters have high intra-board and inter-device reproducibility despite only heating a NAAT cartridge from below. We validated the small-area heaters by lysing methicillin-resistant Staphylococcus aureus (MRSA) cells and the large-area heaters by performing two types of isothermal NAATs (isothermal strand displacement amplification (iSDA) and loop-mediated isothermal amplification (LAMP)). These results demonstrate the merit of integrating NAAT heaters and control electronics onto a single printed circuit board and are a step toward translating NAATs to the home.

Indexed as

Methicillin-Resistant Staphylococcus aureusNucleic AcidsNucleic Acid Amplification TechniquesPoint-of-Care SystemsReproducibility of ResultsNucleic Acids

Identifiers

PMID37099532
PMCPMC10132542
OpenAlexW4367044823

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.