Evidence map›Paper›PMID 37098549›Full record

ArticleBioData mining2023

A self-inspected adaptive SMOTE algorithm (SASMOTE) for highly imbalanced data classification in healthcare.

Tanapol Kosolwattana, Chenang Liu, Renjie Hu, Shizhong Han, Hua Chen, Ying Lin

Abstract read
In one paragraph

Article in BioData mining, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

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3 · Its place in the literature

Who cites it

22 citing papers in PubMed.

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4 · The record

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5 · Who and what money

Authors and funding

6 authors.

Tanapol KosolwattanaDepartment of Industrial Engineering, University of Houston, Houston, USA.
Chenang LiuSchool of Industrial Engineering & Management, Oklahoma State University, Stillwater, USA.
Renjie HuDepartment of Information and Logistics Technology, University of Houston, Houston, USA.
Shizhong HanDepartment of Psychiatry and Behavioral Sciences, Johns Hopkins School of Medicine, Baltimore, USA.
Hua ChenDepartment of Pharmaceutical Health Outcomes and Policy, University of Houston, Houston, USA.
Ying LinDepartment of Industrial Engineering, University of Houston, Houston, USA. ylin58@uh.edu.

Funding

Integrative approaches to identification and interpretation of genes underlying psychiatric disordersR01MH121394 · NIMH · LIEBER INSTITUTE, INC. · PI HAN, SHIZHONG · 2020 to 2023
$2.4M
NIMH NIH HHS R01MH121394
6 · The paper itself

Abstract

In many healthcare applications, datasets for classification may be highly imbalanced due to the rare occurrence of target events such as disease onset. The SMOTE (Synthetic Minority Over-sampling Technique) algorithm has been developed as an effective resampling method for imbalanced data classification by oversampling samples from the minority class. However, samples generated by SMOTE may be ambiguous, low-quality and non-separable with the majority class. To enhance the quality of generated samples, we proposed a novel self-inspected adaptive SMOTE (SASMOTE) model that leverages an adaptive nearest neighborhood selection algorithm to identify the "visible" nearest neighbors, which are used to generate samples likely to fall into the minority class. To further enhance the quality of the generated samples, an uncertainty elimination via self-inspection approach is introduced in the proposed SASMOTE model. Its objective is to filter out the generated samples that are highly uncertain and inseparable with the majority class. The effectiveness of the proposed algorithm is compared with existing SMOTE-based algorithms and demonstrated through two real-world case studies in healthcare, including risk gene discovery and fatal congenital heart disease prediction. By generating the higher quality synthetic samples, the proposed algorithm is able to help achieve better prediction performance (in terms of F1 score) on average compared to the other methods, which is promising to enhance the usability of machine learning models on highly imbalanced healthcare data.

Indexed as

Adaptive nearest neighborhood selectionImbalanced data classification in healthcareSelf-inspectionSMOTE-based resampling

Identifiers

PMID37098549
PMCPMC10131309

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.