Evidence map›Paper›PMID 37097039›Full record

ArticleMolecular oncology2023

Prognostic association of immunoproteasome expression in solid tumours is governed by the immediate immune environment.

Rahul Kumar, Bhavya Dhaka, Sarthak Sahoo, Mohit Kumar Jolly, Radhakrishnan Sabarinathan

Open access · goldAbstract read
In one paragraph

Article in Molecular oncology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
2.1field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 9 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Rahul KumarNational Centre for Biological Sciences, Tata Institute of Fundamental Research, Bengaluru, India.
Bhavya DhakaNational Centre for Biological Sciences, Tata Institute of Fundamental Research, Bengaluru, India.
Sarthak SahooCentre for BioSystems Science and Engineering, Indian Institute of Science, Bengaluru, India.
Mohit Kumar JollyCentre for BioSystems Science and Engineering, Indian Institute of Science, Bengaluru, India.
Radhakrishnan SabarinathanNational Centre for Biological Sciences, Tata Institute of Fundamental Research, Bengaluru, India.ORCID 0000-0001-8916-3954
Tata Institute of Fundamental Research · INIndian Institute of Science Bangalore · IN

Funding

Bioinformatics Centre Grant funded by Department of Biotechnology, India BT/PR40187/BTIS/137/9/2021DBT/Wellcome Trust India Alliance Fellowship IA/I/20/1/504928Department of Atomic Energy, Government of India RTI 4006NCBS-TIFR
6 · The paper itself

Abstract

Induction of immunoproteasome (IP) expression in tumour cells can enhance antigen presentation and immunogenicity. Recently, the overexpression of IP genes has been associated with better prognosis and response to immune checkpoint blockade (ICB) therapies in melanoma. However, the extent of this association in other solid tumours and how that is influenced by tumour cell-intrinsic and cell-extrinsic factors remain unclear. Here, we address this by exploring the gene expression patterns from available bulk and single-cell transcriptomic data of primary tumours. We find that tumours with high-IP expression exhibit cytotoxic immune cell infiltration and upregulation of IFN-γ and TNF-α pathways in tumour cells. However, the association of IP expression with overall survival (TCGA cohort) and response to ICB therapy (non-TCGA cohorts) is tumour-type specific (better in non-small-cell lung, breast, bladder and thymus; and worse in glioma and renal) and is greatly influenced by pro- or antitumourigenic immune cell infiltration patterns. This emphasises the need for considering immune cell infiltration patterns, along with IP expression, as a prognostic biomarker to predict overall survival or response to ICB therapies in solid tumours, besides melanoma.

Indexed as

Carcinoma, Non-Small-Cell LungLung NeoplasmsMelanomaGene Expression ProfilingHumansPrognosiscytotoxic activityimmune cell infiltrationimmune checkpoint blockadeimmunoproteasomeinflammatory response

Identifiers

PMID37097039
PMCPMC10257426
OpenAlexW4366985187

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.