Evidence map›Paper›PMID 37095130›Full record

ArticleNature communications2023

Associations between in vitro, in vivo and in silico cell classes in mouse primary visual cortex.

Yina Wei, Anirban Nandi, Xiaoxuan Jia, Joshua H Siegle, Daniel Denman, Soo Yeun Lee, Anatoly Buchin, Werner Van Geit, Clayton P Mosher, Shawn Olsen and 1 more

Abstract read
In one paragraph

Article in Nature communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Article
  2. Review
  3. Neuropixels reveal laminar microcircuit organization in monkey V1 in vivo.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  4. Article
  5. Article
  6. Article
  7. Neuropixels reveal structure-function relationships in monkey V1bioRxiv : the preprint server for biology · 2025
    Article
  8. Article
  9. Article
  10. Article
  11. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors.

Yina WeiZhejiang Lab, Hangzhou, 311100, China. weiyina039@zhejianglab.com.
Anirban NandiAllen Institute for Brain Science, Seattle, WA, 98109, USA.
Xiaoxuan JiaAllen Institute for Brain Science, Seattle, WA, 98109, USA.
Joshua H SiegleAllen Institute for Brain Science, Seattle, WA, 98109, USA.ORCID 0000-0002-7736-4844
Daniel DenmanUniversity of Denver, Denver, CO, 80208, USA.
Soo Yeun LeeAllen Institute for Brain Science, Seattle, WA, 98109, USA.ORCID 0000-0001-8224-0144
Anatoly BuchinAllen Institute for Brain Science, Seattle, WA, 98109, USA.
Werner Van GeitBlue Brain Project, École Polytechnique Fédérale de Lausanne (EPFL) Campus Biotech, Geneva, 1202, Switzerland.ORCID 0000-0002-2915-720X
Clayton P MosherDepartment of Neurosurgery, Cedars-Sinai Medical Center, Los Angeles, CA, 90048, USA.
Shawn OlsenAllen Institute for Brain Science, Seattle, WA, 98109, USA.ORCID 0000-0002-9568-7057
Costas A AnastassiouDepartment of Neurosurgery, Cedars-Sinai Medical Center, Los Angeles, CA, 90048, USA. costas.anastassiou@cshs.org.ORCID 0000-0002-6793-0611

Funding

Multi-modal, large-scale characterization of cellular and cell-type-specific effects with electric stimulation in rodent and human brainR01NS120300 · NINDS · ALLEN INSTITUTE · PI LEE, SOO YEUN · 2020 to 2024
$2.8M
NINDS NIH HHS R01 NS120300
6 · The paper itself

Abstract

The brain consists of many cell classes yet in vivo electrophysiology recordings are typically unable to identify and monitor their activity in the behaving animal. Here, we employed a systematic approach to link cellular, multi-modal in vitro properties from experiments with in vivo recorded units via computational modeling and optotagging experiments. We found two one-channel and six multi-channel clusters in mouse visual cortex with distinct in vivo properties in terms of activity, cortical depth, and behavior. We used biophysical models to map the two one- and the six multi-channel clusters to specific in vitro classes with unique morphology, excitability and conductance properties that explain their distinct extracellular signatures and functional characteristics. These concepts were tested in ground-truth optotagging experiments with two inhibitory classes unveiling distinct in vivo properties. This multi-modal approach presents a powerful way to separate in vivo clusters and infer their cellular properties from first principles.

Indexed as

BrainPrimary Visual CortexAnimalsBiophysicsMice

Identifiers

PMID37095130
PMCPMC10126114

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.