Evidence map›Paper›PMID 37095096›Full record

ArticleNature communications2023

Tradeoff between lag time and growth rate drives the plasmid acquisition cost.

Mehrose Ahmad, Hannah Prensky, Jacqueline Balestrieri, Shahd ElNaggar, Angela Gomez-Simmonds, Anne-Catrin Uhlemann, Beth Traxler, Abhyudai Singh, Allison J Lopatkin

Abstract read
In one paragraph

Article in Nature communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed.

  1. Article
  2. Plasmid-encoded host reprogramming promotes plasmid dissemination.bioRxiv : the preprint server for biology · 2026
    Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. A foundation model for microbial growth dynamics.bioRxiv : the preprint server for biology · 2025
    Article
  9. Article
  10. Conjugative delivery of toxin genesJournal of bacteriology · 2025
    Article
  11. The extended mobility of plasmids.Nucleic acids research · 2025
    Review
  12. Review
  13. The metabolic burden associated with plasmid acquisition: An assessment of the unrecognized benefits to host cells.BioEssays : news and reviews in molecular, cellular and developmental biology · 2025
    Review
  14. Article
  15. Article
  16. First report of a carbapenem-resistantCurrent research in microbial sciences · 2025
    Article
  17. Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Mehrose AhmadDepartment of Biology, Barnard College, New York, NY, 10027, USA.
Hannah PrenskyDepartment of Biology, Barnard College, New York, NY, 10027, USA.
Jacqueline BalestrieriDepartment of Biology, Barnard College, New York, NY, 10027, USA.
Shahd ElNaggarDepartment of Biology, Barnard College, New York, NY, 10027, USA.ORCID 0000-0003-1068-1578
Angela Gomez-SimmondsDepartment of Medicine, Division of Infectious Diseases, Columbia University Medical Center, New York, NY, 10032, USA.ORCID 0000-0001-5078-7137
Anne-Catrin UhlemannDepartment of Medicine, Division of Infectious Diseases, Columbia University Medical Center, New York, NY, 10032, USA.ORCID 0000-0002-9798-4768
Beth TraxlerDepartment Microbiology, University of Washington, Seattle, WA, 98195, USA.
Abhyudai SinghDepartment of Electrical and Computer Engineering, University of Delaware, Newark, DE, 19717, USA.ORCID 0000-0002-1451-2838
Allison J LopatkinDepartment of Biology, Barnard College, New York, NY, 10027, USA. allison.lopatkin@rochester.edu.ORCID 0000-0003-0018-9205

Funding

Mechanism of the Fluoroquinolone Resistance Acquisition in EnterobacteriaR01AI150152 · NIAID · UNIVERSITY OF WASHINGTON · PI SOKURENKO, EVGENI VENIAMINOVIC, TRAXLER, BETH A · 2021 to 2025
$3.6M
Generalized fluctuation test for deciphering phenotypic switching within cell populationsR35GM148351 · NIGMS · UNIVERSITY OF DELAWARE · PI Abhyudai Singh · 2023 to 2026
$1.6M
Establishing a mechanistic basis for the plasmid acquisition costR15GM143694 · NIGMS · BARNARD COLLEGE · PI LOPATKIN, ALLISON · 2021 to 2021
$238k
NIAID NIH HHS R01 AI150152NIGMS NIH HHS R15 GM143694NIGMS NIH HHS R35 GM148351
6 · The paper itself

Abstract

Conjugative plasmids drive genetic diversity and evolution in microbial populations. Despite their prevalence, plasmids can impose long-term fitness costs on their hosts, altering population structure, growth dynamics, and evolutionary outcomes. In addition to long-term fitness costs, acquiring a new plasmid introduces an immediate, short-term perturbation to the cell. However, due to the transient nature of this plasmid acquisition cost, a quantitative understanding of its physiological manifestations, overall magnitudes, and population-level implications, remains unclear. To address this, here we track growth of single colonies immediately following plasmid acquisition. We find that plasmid acquisition costs are primarily driven by changes in lag time, rather than growth rate, for nearly 60 conditions covering diverse plasmids, selection environments, and clinical strains/species. Surprisingly, for a costly plasmid, clones exhibiting longer lag times also achieve faster recovery growth rates, suggesting an evolutionary tradeoff. Modeling and experiments demonstrate that this tradeoff leads to counterintuitive ecological dynamics, whereby intermediate-cost plasmids outcompete both their low and high-cost counterparts. These results suggest that, unlike fitness costs, plasmid acquisition dynamics are not uniformly driven by minimizing growth disadvantages. Moreover, a lag/growth tradeoff has clear implications in predicting the ecological outcomes and intervention strategies of bacteria undergoing conjugation.

Indexed as

BacteriaGene Transfer, HorizontalPlasmids

Identifiers

PMID37095096
PMCPMC10126158

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.