Evidence map›Paper›PMID 37094147›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2023

Allelic resolution of insect and spider silk genes reveals hidden genetic diversity.

Paul B Frandsen, Scott Hotaling, Ashlyn Powell, Jacqueline Heckenhauer, Akito Y Kawahara, Richard H Baker, Cheryl Y Hayashi, Blanca Ríos-Touma, Ralph Holzenthal, Steffen U Pauls and 1 more

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.9field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 19 citations in OpenAlex.

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  15. Overview and Evolution of Insect Fibroin Heavy Chain (FibH).International journal of molecular sciences · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 9 institutions in 3 countries.

Paul B FrandsenDepartment of Plant and Wildlife Sciences, Brigham Young University, Provo, UT 84602.ORCID 0000-0002-4801-7579
Scott HotalingDepartment of Watershed Sciences, Utah State University, Logan, UT 84322.
Ashlyn PowellDepartment of Plant and Wildlife Sciences, Brigham Young University, Provo, UT 84602.
Jacqueline HeckenhauerLOEWE Centre for Translational Biodiversity Genomics, Frankfurt 60325, Germany.ORCID 0000-0001-8771-9154
Akito Y KawaharaMcGuire Center for Lepidoptera and Biodiversity, Florida Museum of Natural History, University of Florida, Gainesville, FL 32611.ORCID 0000-0002-3724-4610
Richard H BakerDivision of Invertebrate Zoology and Institute for Comparative Genomics, American Museum of Natural History, New York, NY 10024.
Cheryl Y HayashiDivision of Invertebrate Zoology and Institute for Comparative Genomics, American Museum of Natural History, New York, NY 10024.ORCID 0000-0001-9189-9151
Blanca Ríos-ToumaFacultad de Ingenierías y Ciencias Aplicadas, Grupo de Investigación en Biodiversidad, Medio Ambiente y Salud, Universidad de las Américas, Quito 170503, Ecuador.ORCID 0000-0002-3921-0908
Ralph HolzenthalDepartment of Entomology, University of Minnesota, St. Paul, MN 55108.ORCID 0000-0003-1853-6340
Steffen U PaulsLOEWE Centre for Translational Biodiversity Genomics, Frankfurt 60325, Germany.ORCID 0000-0002-6451-3425
Russell J StewartDepartment of Biomedical Engineering, University of Utah, Salt Lake City, UT 84112.
American Museum of Natural History · USBrigham Young University · USFlorida Museum of Natural History · USJustus-Liebig-Universität Gießen · DESenckenberg Research Institute and Natural History Museum Frankfurt/M · DEUniversidad de Las Américas · ECUniversity of Minnesota · USUniversity of Utah · USUtah State University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Arthropod silk is vital to the evolutionary success of hundreds of thousands of species. The primary proteins in silks are often encoded by long, repetitive gene sequences. Until recently, sequencing and assembling these complex gene sequences has proven intractable given their repetitive structure. Here, using high-quality long-read sequencing, we show that there is extensive variation-both in terms of length and repeat motif order-between alleles of silk genes within individual arthropods. Further, this variation exists across two deep, independent origins of silk which diverged more than 500 Mya: the insect clade containing caddisflies and butterflies and spiders. This remarkable convergence in previously overlooked patterns of allelic variation across multiple origins of silk suggests common mechanisms for the generation and maintenance of structural protein-coding genes. Future genomic efforts to connect genotypes to phenotypes should account for such allelic variation.

Indexed as

ButterfliesFibroinsSpidersAllelesAmino Acid SequenceAnimalsGenetic VariationInsectaInsect ProteinsPhylogenySilkFibroinsInsect ProteinsSilkallelesgenomicsinsectslong-read sequencingsilk

Identifiers

PMID37094147
PMCPMC10161007
OpenAlexW4366816471

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.