Evidence map›Paper›PMID 37093861›Full record

ArticlePLoS computational biology2023

Efficient coding of natural scenes improves neural system identification.

Yongrong Qiu, David A Klindt, Klaudia P Szatko, Dominic Gonschorek, Larissa Hoefling, Timm Schubert, Laura Busse, Matthias Bethge, Thomas Euler

Abstract read
In one paragraph

Article in PLoS computational biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
  2. Inhibition benefits neural system identification.bioRxiv : the preprint server for biology · 2026
    Article
  3. Article
  4. Article
  5. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Yongrong QiuInstitute for Ophthalmic Research, U Tübingen, Tübingen, Germany.
David A KlindtInstitute for Ophthalmic Research, U Tübingen, Tübingen, Germany.
Klaudia P SzatkoInstitute for Ophthalmic Research, U Tübingen, Tübingen, Germany.
Dominic GonschorekInstitute for Ophthalmic Research, U Tübingen, Tübingen, Germany.
Larissa HoeflingInstitute for Ophthalmic Research, U Tübingen, Tübingen, Germany.
Timm SchubertInstitute for Ophthalmic Research, U Tübingen, Tübingen, Germany.
Laura BusseDivision of Neurobiology, Faculty of Biology, LMU Munich, Planegg-Martinsried, Germany.ORCID 0000-0002-6127-7754
Matthias BethgeCentre for Integrative Neuroscience (CIN), U Tübingen, Tübingen, Germany.
Thomas EulerInstitute for Ophthalmic Research, U Tübingen, Tübingen, Germany.ORCID 0000-0002-4567-6966

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Neural system identification aims at learning the response function of neurons to arbitrary stimuli using experimentally recorded data, but typically does not leverage normative principles such as efficient coding of natural environments. Visual systems, however, have evolved to efficiently process input from the natural environment. Here, we present a normative network regularization for system identification models by incorporating, as a regularizer, the efficient coding hypothesis, which states that neural response properties of sensory representations are strongly shaped by the need to preserve most of the stimulus information with limited resources. Using this approach, we explored if a system identification model can be improved by sharing its convolutional filters with those of an autoencoder which aims to efficiently encode natural stimuli. To this end, we built a hybrid model to predict the responses of retinal neurons to noise stimuli. This approach did not only yield a higher performance than the "stand-alone" system identification model, it also produced more biologically plausible filters, meaning that they more closely resembled neural representation in early visual systems. We found these results applied to retinal responses to different artificial stimuli and across model architectures. Moreover, our normatively regularized model performed particularly well in predicting responses of direction-of-motion sensitive retinal neurons. The benefit of natural scene statistics became marginal, however, for predicting the responses to natural movies. In summary, our results indicate that efficiently encoding environmental inputs can improve system identification models, at least for noise stimuli, and point to the benefit of probing the visual system with naturalistic stimuli.

Indexed as

NeuronsNoiseEnvironmentModels, NeurologicalPhotic Stimulation

Identifiers

PMID37093861
PMCPMC10159360

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.