Evidence map›Paper›PMID 37093325›Full record

ArticleEuropean journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology2023

A ring trial to harmonize Toxoplasma gondii microsatellite typing: comparative analysis of results and recommendations for optimization.

M Joeres, G Cardron, K Passebosc-Faure, N Plault, M Fernández-Escobar, C M Hamilton, L O'Brien-Anderson, R Calero-Bernal, L Galal, C Luttermann and 7 more

Abstract read
In one paragraph

Article in European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed.

  1. Article
  2. Evolution ofJournal of parasitology research · 2026
    Review
  3. Evolutionary history, longevity and terrestriality predictInternational journal for parasitology. Parasites and wildlife · 2025
    Article
  4. Molecular detection ofEuro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin · 2025
    Article
  5. Seroprevalence ofPathogens (Basel, Switzerland) · 2025
    Article
  6. Article
  7. Article
  8. Multiple Typing Approach to CharacterizeAnimals : an open access journal from MDPI · 2024
    Article
  9. Article
  10. Genotyping of European Toxoplasma gondii strains by a new high-resolution next-generation sequencing-based method.European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology · 2024
    Article
  11. Article
  12. First detection ofFrontiers in cellular and infection microbiology · 2024
    Article
  13. Article
  14. Review
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors.

M JoeresInstitute of Epidemiology, Federal Research Institute for Animal Health, Friedrich-Loeffler-Institut, Südufer 10, 17493, Greifswald-Insel Riems, Germany.ORCID https://orcid.org/0000-0002-7855-8579
G CardronInstitute of Epidemiology, Federal Research Institute for Animal Health, Friedrich-Loeffler-Institut, Südufer 10, 17493, Greifswald-Insel Riems, Germany.
K Passebosc-FaureCentre National de Référence (CNR) Toxoplasmose Centre Hospitalier-Universitaire Dupuytren, Limoges, France.ORCID https://orcid.org/0000-0001-6752-8916
N PlaultInserm U1094, IRD U270, Univ. Limoges, CHU Limoges, EpiMaCT - Epidemiology of Chronic Diseases in Tropical Zone, Institute of Epidemiology and Tropical Neurology, OmegaHealth, Limoges, France.
M Fernández-EscobarSALUVET, Animal Health Department, Faculty of Veterinary Sciences, Complutense University of Madrid, Madrid, Spain.ORCID https://orcid.org/0000-0002-0530-544X
C M HamiltonThe Moredun Research Institute, Penicuik, Midlothian, UK.ORCID https://orcid.org/0000-0002-2101-5194
L O'Brien-AndersonInfectious Disease Preparedness, Statens Serum Institut, Copenhagen, Denmark.
R Calero-BernalSALUVET, Animal Health Department, Faculty of Veterinary Sciences, Complutense University of Madrid, Madrid, Spain.ORCID https://orcid.org/0000-0003-2323-0135
L GalalInserm U1094, IRD U270, Univ. Limoges, CHU Limoges, EpiMaCT - Epidemiology of Chronic Diseases in Tropical Zone, Institute of Epidemiology and Tropical Neurology, OmegaHealth, Limoges, France.ORCID https://orcid.org/0000-0002-2921-3849
C LuttermannInstitute of Immunology, Federal Research Institute for Animal Health, Friedrich-Loeffler-Institut, -Insel Riems, Greifswald, Germany.ORCID https://orcid.org/0000-0002-6977-9900
P MaksimovInstitute of Epidemiology, Federal Research Institute for Animal Health, Friedrich-Loeffler-Institut, Südufer 10, 17493, Greifswald-Insel Riems, Germany.ORCID https://orcid.org/0000-0002-9457-0658
F J ConrathsInstitute of Epidemiology, Federal Research Institute for Animal Health, Friedrich-Loeffler-Institut, Südufer 10, 17493, Greifswald-Insel Riems, Germany.ORCID https://orcid.org/0000-0002-7400-9409
M L DardéCentre National de Référence (CNR) Toxoplasmose Centre Hospitalier-Universitaire Dupuytren, Limoges, France.ORCID https://orcid.org/0000-0002-9808-4569
L M Ortega-MoraSALUVET, Animal Health Department, Faculty of Veterinary Sciences, Complutense University of Madrid, Madrid, Spain.ORCID https://orcid.org/0000-0002-4986-6783
P JokelainenInfectious Disease Preparedness, Statens Serum Institut, Copenhagen, Denmark.ORCID https://orcid.org/0000-0002-3035-5094
A MercierCentre National de Référence (CNR) Toxoplasmose Centre Hospitalier-Universitaire Dupuytren, Limoges, France.ORCID https://orcid.org/0000-0003-4332-5879
G ScharesInstitute of Epidemiology, Federal Research Institute for Animal Health, Friedrich-Loeffler-Institut, Südufer 10, 17493, Greifswald-Insel Riems, Germany. gereon.schares@fli.de.ORCID http://orcid.org/0000-0002-3217-289X

Funding

Agence Nationale de la Recherche IntroTox 17-CE35-0004Horizon 2020 773830
6 · The paper itself

Abstract

A ring trial among five European laboratories was organized to reach consistency in microsatellite (MS) typing of the zoonotic parasite Toxoplasma gondii. Three sample sets were circulated and analyzed by each laboratory following a previously published method that is based on fragment length polymorphism of 15 MS markers. The first sample set compared typing results in general and focused on effects of DNA concentration; the second sample set focused on the polymorphic fingerprinting markers that can differentiate T. gondii strains within the same archetypal lineage; and the third set focused on non-archetypal genotypes. Methodological variations between laboratories, including the software programs used to determine MS fragment length, were collated using a questionnaire. Overall, lineage-level typing results reached a high level of agreement, especially in samples with the highest DNA concentrations. However, laboratory-specific differences were observed for particular markers. Major median differences in fragment length, of up to 6 base pairs, were related to the fluorophore used to label fragment-specific primers. In addition, primer pairs with identical sequences obtained from different suppliers resulted in fragments of differing length. Furthermore, differences in the way the sequencing profiles were assessed and interpreted may have led to deviating results in fragment length determination. Harmonization of MS typing, for example, by using the same fluorophores or by numerical adjustments applied to the fragment-lengths determined, could improve the uniformity of the results across laboratories. This is the first interlaboratory comparison, providing guidelines (added as a supplement) for the optimization of this technique.

Indexed as

ToxoplasmaToxoplasmosis, AnimalAnimalsDNA, ProtozoanGenetic VariationGenotypeHumansMicrosatellite RepeatsPolymorphism, Restriction Fragment LengthDNA, ProtozoanDNA quantificationGenotypingInterlaboratory comparisonSubtypingToxoplasmosis

Identifiers

PMID37093325
PMCPMC10266996

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.