Evidence map›Paper›PMID 37091735›Full record

ArticleAccess microbiology2023

Lower respiratory tract microbiome composition and community interactions in smokers.

Michael Campos, Trevor Cickovski, Mitch Fernandez, Melita Jaric, Adam Wanner, Gregory Holt, Elio Donna, Eliana Mendes, Eugenia Silva-Herzog, Lisa Schneper and 8 more

Abstract read
In one paragraph

Article in Access microbiology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors.

Michael CamposDivision of Pulmonary, Allergy, Critical Care and Sleep Medicine, Miller School of Medicine, University of Miami, Miami, FL, USA.
Trevor CickovskiBioinformatics Research Group (BioRG), School of Computing and Information Sciences, Florida International University, Miami, FL, USA.ORCID https://orcid.org/0000-0003-2724-6951
Mitch FernandezBioinformatics Research Group (BioRG), School of Computing and Information Sciences, Florida International University, Miami, FL, USA.
Melita JaricBioinformatics Research Group (BioRG), School of Computing and Information Sciences, Florida International University, Miami, FL, USA.
Adam WannerDivision of Pulmonary, Allergy, Critical Care and Sleep Medicine, Miller School of Medicine, University of Miami, Miami, FL, USA.
Gregory HoltDivision of Pulmonary, Allergy, Critical Care and Sleep Medicine, Miller School of Medicine, University of Miami, Miami, FL, USA.
Elio DonnaDivision of Pulmonary, Allergy, Critical Care and Sleep Medicine, Miller School of Medicine, University of Miami, Miami, FL, USA.
Eliana MendesDivision of Pulmonary, Allergy, Critical Care and Sleep Medicine, Miller School of Medicine, University of Miami, Miami, FL, USA.
Eugenia Silva-HerzogDepartment of Molecular Microbiology and Infectious Diseases, Department Human and Molecular Genetics, Herbert Wertheim College of Medicine, Florida International University, Miami, FL, USA.
Lisa SchneperDepartment of Molecular Microbiology and Infectious Diseases, Department Human and Molecular Genetics, Herbert Wertheim College of Medicine, Florida International University, Miami, FL, USA.
Jonathan SegalDepartment of Molecular Microbiology and Infectious Diseases, Department Human and Molecular Genetics, Herbert Wertheim College of Medicine, Florida International University, Miami, FL, USA.
David Moraga AmadorInterdisciplinary Center for Biotechnology Research, University of Florida, Gainesville, FL, USA.
Juan Daniel RiverosBioinformatics Research Group (BioRG), School of Computing and Information Sciences, Florida International University, Miami, FL, USA.
Vanessa Aguiar-PulidoBioinformatics Research Group (BioRG), School of Computing and Information Sciences, Florida International University, Miami, FL, USA.
Santanu BanerjeeDepartment of Surgery, Miller School of Medicine, University of Miami, Miami, FL, USA.
Matthias SalatheDepartment of Internal Medicine, University of Kansas Medical Center, Kansas City, KS 66160, USA.
Kalai MatheeDepartment of Molecular Microbiology and Infectious Diseases, Department Human and Molecular Genetics, Herbert Wertheim College of Medicine, Florida International University, Miami, FL, USA.
Giri NarasimhanBioinformatics Research Group (BioRG), School of Computing and Information Sciences, Florida International University, Miami, FL, USA.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The lung microbiome impacts on lung function, making any smoking-induced changes in the lung microbiome potentially significant. The complex co-occurrence and co-avoidance patterns between the bacterial taxa in the lower respiratory tract (LRT) microbiome were explored for a cohort of active (AS), former (FS) and never (NS) smokers. Bronchoalveolar lavages (BALs) were collected from 55 volunteer subjects (9 NS, 24 FS and 22 AS). The LRT microbiome composition was assessed using 16S rRNA amplicon sequencing. Identification of differentially abundant taxa and co-occurrence patterns, discriminant analysis and biomarker inferences were performed. The data show that smoking results in a loss in the diversity of the LRT microbiome, change in the co-occurrence patterns and a weakening of the tight community structure present in healthy microbiomes. The increased abundance of the genus

Indexed as

clusteringco-occurrence networkslower respiratory tract (LRT)microbiomesmoking

Identifiers

PMID37091735
PMCPMC10118249

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.