Evidence map›Paper›PMID 37091563›Full record

ArticleEcology and evolution2023

Revisiting the historical scenario of a disease dissemination using genetic data and Approximate Bayesian Computation methodology: The case of

A Gilabert, A Rieux, S Robert, R Vitalis, M-F Zapater, C Abadie, J Carlier, V Ravigné

Open access · goldAbstract read
In one paragraph

Article in Ecology and evolution, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.6field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 2 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 2 countries.

A GilabertUniversité de la Réunion, UMR PVBMT Saint-Pierre France.ORCID https://orcid.org/0000-0003-0764-9171
A RieuxCIRAD, UMR PVBMT Saint-Pierre France.ORCID https://orcid.org/0000-0002-7221-0010
S RobertCIRAD, UMR PHIM Montpellier France.
R VitalisCBGP Univ Montpellier, CIRAD, INRAE, Institut Agro, IRD Montpellier France.
M-F ZapaterCIRAD, UMR PHIM Montpellier France.
C AbadieCIRAD, UMR PHIM Montpellier France.
J CarlierCIRAD, UMR PHIM Montpellier France.
V RavignéCIRAD, UMR PHIM Montpellier France.
Centre de Coopération Internationale en Recherche Agronomique pour le Développement · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The reconstruction of geographic and demographic scenarios of dissemination for invasive pathogens of crops is a key step toward improving the management of emerging infectious diseases. Nowadays, the reconstruction of biological invasions typically uses the information of both genetic and historical information to test for different hypotheses of colonization. The Approximate Bayesian Computation framework and its recent Random Forest development (ABC-RF) have been successfully used in evolutionary biology to decipher multiple histories of biological invasions. Yet, for some organisms, typically plant pathogens, historical data may not be reliable notably because of the difficulty to identify the organism and the delay between the introduction and the first mention. We investigated the history of the invasion of Africa by the fungal pathogen of banana

Indexed as

Approximate Bayesian Computationemerging diseasepopulation geneticsrandom forest

Identifiers

PMID37091563
PMCPMC10116021
OpenAlexW4366599151

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.