Evidence map›Paper›PMID 37086753›Full record

ArticleJournal of neuroscience methods2023

Approaches to characterizing oscillatory burst detection algorithms for electrophysiological recordings.

Ziao Chen, Drew B Headley, Luisa F Gomez-Alatorre, Vasiliki Kanta, K C Ho, Denis Pare, Satish S Nair

Abstract read
In one paragraph

Article in Journal of neuroscience methods, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Microcircuitry and oscillation features across model cortical regions.The ... Midwest Symposium on Circuits and Systems conference proceedings : MWSCAS. Midwest Symposium on Circuits and Systems · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Ziao ChenElectrical Engineering & Computer Science, University of Missouri, Columbia, MO 65211, USA.
Drew B HeadleyCenter for Molecular and Behavioral Neuroscience, Rutgers University, Newark, 197 University Ave, Newark, NJ 07102, USA.
Luisa F Gomez-AlatorreCenter for Molecular and Behavioral Neuroscience, Rutgers University, Newark, 197 University Ave, Newark, NJ 07102, USA; Behavioral and Neural Sciences Graduate Program, Rutgers University, Newark, 197 University Ave, Newark, NJ 07102, USA.
Vasiliki KantaCenter for Molecular and Behavioral Neuroscience, Rutgers University, Newark, 197 University Ave, Newark, NJ 07102, USA; Behavioral and Neural Sciences Graduate Program, Rutgers University, Newark, 197 University Ave, Newark, NJ 07102, USA.
K C HoElectrical Engineering & Computer Science, University of Missouri, Columbia, MO 65211, USA.
Denis PareCenter for Molecular and Behavioral Neuroscience, Rutgers University, Newark, 197 University Ave, Newark, NJ 07102, USA.
Satish S NairElectrical Engineering & Computer Science, University of Missouri, Columbia, MO 65211, USA. Electronic address: nairs@missouri.edu.

Funding

Coordination of M1 projection neuron subtypes by oscillationsR01NS123396 · NINDS · RUTGERS THE STATE UNIV OF NJ NEWARK · PI DREW BATTENFIELD HEADLEY · 2022 to 2026
$2.0M
Closed-loop optogenetic control of gamma oscillations and emotional learningR01MH119854 · NIMH · RUTGERS THE STATE UNIV OF NJ NEWARK · PI PARE, DENIS · 2019 to 2023
$1.9M
CRCNS: Optimization of closed-loop control of gamma oscillationsR01MH122023 · NIMH · UNIVERSITY OF MISSOURI-COLUMBIA · PI NAIR, SATISH S · 2019 to 2023
$1.4M
NIMH NIH HHS R01 MH119854NIMH NIH HHS R01 MH122023NINDS NIH HHS R01 NS123396
6 · The paper itself

Abstract

backgroundCognitive processes are associated with fast oscillations of the local field potential and electroencephalogram. There is a growing interest in targeting them because these are disrupted by aging and disease. This has proven challenging because they often occur as short-lasting bursts. Moreover, they are obscured by broad-band aperiodic activity reflecting other neural processes. These attributes have made it exceedingly difficult to develop analytical tools for estimating the reliability of detection methods. NEW

methodTo address this challenge, we developed an open-source toolkit with four processing steps, that can be tailored to specific brain states and individuals. First, the power spectrum is decomposed into periodic and aperiodic components, each of whose properties are estimated. Second, the properties of the transient oscillatory bursts that contribute to the periodic component are derived and optimized to account for contamination from the aperiodic component. Third, using the burst properties and aperiodic power spectrum, surrogate neural signals are synthesized that match the observed signal's spectrotemporal properties. Lastly, oscillatory burst detection algorithms run on the surrogate signals are subjected to a receiver operating characteristic analysis, providing insight into their performance.

resultsThe characterization algorithm extracted features of oscillatory bursts across multiple frequency bands and brain regions, allowing for recording-specific evaluation of detection performance. For our dataset, the optimal detection threshold for gamma bursts was found to be lower than the one commonly used. COMPARISON WITH EXISTING

methodsExisting methods characterize the power spectrum, while ours evaluates the detection of oscillatory bursts.

conclusionsThis pipeline facilitates the evaluation of thresholds for detection algorithms from individual recordings.

Indexed as

BrainElectroencephalographyAlgorithmsElectrophysiological PhenomenaHumansReproducibility of ResultsElectroencephalogramLocal field potentialOscillationsROCSignal detection

Identifiers

PMID37086753
PMCPMC10175206

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.