Evidence map›Paper›PMID 37085862›Full record

ArticleBMC health services research2023

Cost of exome analysis in patients with intellectual disability: a micro-costing study in a French setting.

A L Soilly, C Robert-Viard, C Besse, A L Bruel, B Gerard, A Boland, A Piton, Y Duffourd, J Muller, C Poë and 16 more

Registry-linked trialAbstract read
In one paragraph

Article in BMC health services research, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT03287206 (Medico-economic Evaluation of Different High-throughput Sequencing Strategies in the Diagnosis of Patients With Intellectual Deficiency), which is not on this map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT03287206 completednot on this map

Medico-economic Evaluation of Different High-throughput Sequencing Strategies in the Diagnosis of Patients With Intellectual Deficiency

TypeobservationalSponsorCentre Hospitalier Universitaire DijonRan2017 to 2023Enrolled337ConditionsIntellectual DeficiencyArmsblood samples from children, blood samples from parents
3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

26 authors.

A L SoillyCHU Dijon Bourgogne, Délégation à la Recherche Clinique et à l'Innovation, USMR, F-21000, Dijon, France.
C Robert-ViardCHU Dijon Bourgogne, Délégation à la Recherche Clinique et à l'Innovation, Unité Innovation, F-21000, Dijon, France.
C BesseUniversité Paris-Saclay, CEA, Centre National de Recherche en Génomique Humaine (CNRGH), Evry, France.
A L BruelInserm, Université Bourgogne-Franche-Comté, UMR1231, équipe GAD, Dijon, France.
B GerardLaboratoires de Diagnostic Génétique, Hôpitaux Universitaires de Strasbourg, Institut de Génétique Médicale d'Alsace (IGMA), 67000, Strasbourg, France.
A BolandUniversité Paris-Saclay, CEA, Centre National de Recherche en Génomique Humaine (CNRGH), Evry, France.
A PitonLaboratoires de Diagnostic Génétique, Hôpitaux Universitaires de Strasbourg, Institut de Génétique Médicale d'Alsace (IGMA), 67000, Strasbourg, France.
Y DuffourdInserm, Université Bourgogne-Franche-Comté, UMR1231, équipe GAD, Dijon, France.
J MullerLaboratoires de Diagnostic Génétique, Hôpitaux Universitaires de Strasbourg, Institut de Génétique Médicale d'Alsace (IGMA), 67000, Strasbourg, France.
C PoëInserm, Université Bourgogne-Franche-Comté, UMR1231, équipe GAD, Dijon, France.
T JouanInserm, Université Bourgogne-Franche-Comté, UMR1231, équipe GAD, Dijon, France.
S El DoueiriCHU Dijon Bourgogne, Service financier, 21000, Dijon, France.
L FaivreInserm, Université Bourgogne-Franche-Comté, UMR1231, équipe GAD, Dijon, France.
D Bacq-DaianUniversité Paris-Saclay, CEA, Centre National de Recherche en Génomique Humaine (CNRGH), Evry, France.
B IsidorService de Génétique Médicale, CHU de Nantes, Nantes, France.
D GenevieveDépartement de Génétique Médicale, Centre de Référence Maladies Rares, Anomalies du Développement et Syndromes Malformatifs Sud-Languedoc Roussillon, Hôpital Arnaud de Villeneuve, Montpellier, France.
S OdentService de Génétique Clinique, Centre Hospitalier Universitaire Rennes, F-35203, Rennes, France.
N PhilipDépartement de Génétique Médicale, Hôpital d'Enfants de La Timone, Marseille, France.
M Doco-FenzyService de Génétique, CHU de Reims, EA3801, Reims, France.
D LacombeCHU de Bordeaux, Génétique Médicale, INSERM U1211, Laboratoire MRGM, Université de Bordeaux, Bordeaux, France.
M L AsensioCHU Dijon Bourgogne, Inserm, Université de Bourgogne, CIC 1432, Module Épidémiologie Clinique, F21000, Dijon, France.
J F DeleuzeUniversité Paris-Saclay, CEA, Centre National de Recherche en Génomique Humaine (CNRGH), Evry, France.
C BinquetCHU Dijon Bourgogne, Inserm, Université de Bourgogne, CIC 1432, Module Épidémiologie Clinique, F21000, Dijon, France.
DISSEQ Investigators Group
C Thauvin-RobinetInserm, Université Bourgogne-Franche-Comté, UMR1231, équipe GAD, Dijon, France.
C LejeuneCHU Dijon Bourgogne, Inserm, Université de Bourgogne, CIC 1432, Module Épidémiologie Clinique, F21000, Dijon, France. catherine.lejeune@u-bourgogne.fr.ORCID http://orcid.org/0000-0001-7351-0798

Funding

French Ministry of Health PRME-15-0322
6 · The paper itself

Abstract

backgroundWith the development of next generation sequencing technologies in France, exome sequencing (ES) has recently emerged as an opportunity to improve the diagnosis rate of patients presenting an intellectual disability (ID). To help French policy makers determine an adequate tariff for ES, we aimed to assess the unit cost per ES diagnostic test for ID from the preparation of the pre-analytical step until the report writing step and to identify its main cost drivers.

methodsA micro-costing bottom-up approach was conducted for the year 2018 in a French setting as part of the DISSEQ study, a cost-effectiveness study funded by the Ministry of Health and performed in collaboration with the GAD (Génétique des Anomalies du Développement), a genetic team from the Dijon University Hospital, and a public sequencing platform, the Centre National de Recherche en Génomique Humaine (CNRGH). The analysis was conducted from the point of view of these two ES stakeholders. All of the resources (labor, equipment, disposables and reagents, reusable material) required to analyze blood samples were identified, collected and valued. Several sensitivity analyses were performed.

resultsThe unit nominal cost per ES diagnostic test for ID was estimated to be €2,019.39. Labor represented 50.7% of the total cost. The analytical step (from the preparation of libraries to the analysis of sequences) represented 88% of the total cost. Sensitivity analyses suggested that a simultaneous price decrease of 20% for the capture kit and 50% for the sequencing support kit led to an estimation of €1,769 per ES diagnostic test for ID.

conclusionThis is the first estimation of ES cost to be done in the French setting of ID diagnosis. The estimation is especially influenced by the price of equipment kits, but more generally by the organization of the centers involved in the different steps of the analysis and the time period in which the study was conducted. This information can now be used to define an adequate tariff and assess the efficiency of ES.

trial registrationClinicalTrials.gov identifier NCT03287206 on September 19, 2017.

Indexed as

Intellectual DisabilityExomeFranceHumansCost analysisExome sequencingIntellectual disabilityMicro-costing

Identifiers

PMID37085862
PMCPMC10120135

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Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.