Evidence map›Paper›PMID 37085756›Full record

ArticleBMC plant biology2023

Grapevine scion gene expression is driven by rootstock and environment interaction.

Zachary N Harris, Julia E Pratt, Laszlo G Kovacs, Laura L Klein, Misha T Kwasniewski, Jason P Londo, Angela S Wu, Allison J Miller

Abstract read
In one paragraph

Article in BMC plant biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Zachary N HarrisDepartment of Biology, Saint Louis University, 3507 Laclede Avenue, St. Louis, MO, 63103-2010, USA. zachary.n.harris@slu.edu.
Julia E PrattDepartment of Biology, Saint Louis University, 3507 Laclede Avenue, St. Louis, MO, 63103-2010, USA.
Laszlo G KovacsDepartment of Biology, Missouri State University, 901 S. National Avenue, Springfield, MO, 65897, USA.
Laura L KleinDepartment of Biology, Saint Louis University, 3507 Laclede Avenue, St. Louis, MO, 63103-2010, USA.
Misha T KwasniewskiDepartment of Food Science, Pennsylvania State University, 326 Rodney A. Erickson Food Science Building, University Park, PA, 16802, USA.
Jason P LondoSchool of Integrative Plant Science, Horticulture Section, Cornell AgriTech, 635 W. North Street, Geneva, NY, 14456, USA.
Angela S WuDepartment of Computer Science, Saint Louis University, 220 N. Grand Blvd, St. Louis, MO, 63103-2010, USA.
Allison J MillerDepartment of Biology, Saint Louis University, 3507 Laclede Avenue, St. Louis, MO, 63103-2010, USA. amiller@danforthcenter.org.

Funding

National Science Foundation 1546869
6 · The paper itself

Abstract

backgroundGrafting is a horticultural practice used widely across woody perennial crop species to fuse together the root and shoot system of two distinct genotypes, the rootstock and the scion, combining beneficial traits from both. In grapevine, grafting is used in nearly 80% of all commercial vines to optimize fruit quality, regulate vine vigor, and enhance biotic and abiotic stress-tolerance. Rootstocks have been shown to modulate elemental composition, metabolomic profiles, and the shape of leaves in the scion, among other traits. However, it is currently unclear how rootstock genotypes influence shoot system gene expression as previous work has reported complex and often contradictory findings.

resultsIn the present study, we examine the influence of grafting on scion gene expression in leaves and reproductive tissues of grapevines growing under field conditions for three years. We show that the influence from the rootstock genotype is highly tissue and time dependent, manifesting only in leaves, primarily during a single year of our three-year study. Further, the degree of rootstock influence on scion gene expression is driven by interactions with the local environment.

conclusionsOur results demonstrate that the role of rootstock genotype in modulating scion gene expression is not a consistent, unchanging effect, but rather an effect that varies over time in relation to local environmental conditions.

Indexed as

Gene-Environment InteractionPlant RootsGene ExpressionGenotypePlant LeavesEnvironmental variationGraftingGrapevinePlasticityTranscriptomics

Identifiers

PMID37085756
PMCPMC10122299

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.