Evidence map›Paper›PMID 37084001›Full record

ArticleThe New phytologist2023

The FLOWERING LOCUS T gene expression is controlled by high-irradiance response and external coincidence mechanism in long days in Arabidopsis.

Nayoung Lee, Yusuke Ozaki, Andrew K Hempton, Hiroshi Takagi, Savita Purusuwashi, Young Hun Song, Motomu Endo, Akane Kubota, Takato Imaizumi

Open access · bronzeAbstract read
In one paragraph

Article in The New phytologist, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
13.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 35 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Horticulture research · 2026
    Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. Review
  15. Circadian and environmental signal integration in a natural population ofProceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  16. Article
  17. Article
  18. Article
  19. Insight from expression profiles ofFrontiers in plant science · 2024
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 3 countries.

Nayoung LeeDepartment of Biology, University of Washington, Seattle, WA, 98195-1800, USA.ORCID 0000-0002-0353-6455
Yusuke OzakiGraduate School of Science and Technology, Nara Institute of Science and Technology, Ikoma, Nara, 630-0192, Japan.
Andrew K HemptonDepartment of Biology, University of Washington, Seattle, WA, 98195-1800, USA.ORCID 0000-0002-3018-6091
Hiroshi TakagiDepartment of Biology, University of Washington, Seattle, WA, 98195-1800, USA.ORCID 0000-0003-0321-0284
Savita PurusuwashiDepartment of Biology, University of Washington, Seattle, WA, 98195-1800, USA.ORCID 0000-0002-4272-0431
Young Hun SongResearch Institute of Agriculture and Life Sciences, Seoul National University, Seoul, 08826, South Korea.ORCID 0000-0002-9744-1835
Motomu EndoGraduate School of Science and Technology, Nara Institute of Science and Technology, Ikoma, Nara, 630-0192, Japan.ORCID 0000-0002-4621-9679
Akane KubotaDepartment of Biology, University of Washington, Seattle, WA, 98195-1800, USA.ORCID 0000-0003-1347-3950
Takato ImaizumiDepartment of Biology, University of Washington, Seattle, WA, 98195-1800, USA.ORCID 0000-0001-9396-4412
University of Washington · USNara Institute of Science and Technology · JPSeoul National University · KR

Funding

Molecular Mechanisms of Seasonal Time MeasurementR01GM079712 · NIGMS · UNIVERSITY OF WASHINGTON · PI IMAIZUMI, TAKATO · 2007 to 2022
$3.5M
NIGMS NIH HHS R01 GM079712NIGMS NIH HHS R01GM079712
6 · The paper itself

Abstract

In natural long days, the florigen gene FLOWERING LOCUS T (FT) shows a bimodal expression pattern with morning and dusk peaks in Arabidopsis. This pattern differs from the one observed in the laboratory, and little is known about underlying mechanisms. A red : far-red (R : FR) ratio difference between sunlight and fluorescent light causes this FT pattern mismatch. We showed that bimodal FT expression patterns were induced in a day longer than 14 h with sunlight R : FR (= c. 1) conditions. By circadian gating experiments, we found that cumulative exposure of R : FR-adjusted light (R : FR ratio was adjusted to 1 with FR supplement) spanning from the afternoon to the next morning required full induction of FT in the morning. Conversely, only 2 h of R : FR adjustment in the late afternoon was sufficient for FT induction at dusk. We identified that phytochrome A (phyA) is required for the morning FT expression in response to the R : FR adjustment on the previous day. As a part of this mechanism, we showed that PHYTOCHROME-INTERACTING FACTOR 7 contributes to FT regulation. Our results suggest that phyA-mediated high-irradiance response and the external coincidence mechanism contribute to morning FT induction under natural long-day conditions.

Indexed as

ArabidopsisArabidopsis ProteinsFlowersGene ExpressionGene Expression Regulation, PlantLightPhotoperiodPhytochrome AArabidopsis ProteinsPhytochrome AArabidopsiscircadian rhythmexternal coincidence mechanismsfar-red lightflorigenlong-day plantsphotoperiodic floweringphytochrome

Identifiers

PMID37084001
PMCPMC10244125
OpenAlexW4366602654

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.