Evidence map›Paper›PMID 37083847›Full record

ArticleArchives of virology2023

Complete genome sequence of triticum yellow stripe virus, a new polerovirus infecting wheat (triticum aestivum) in China.

Dankan Yan, Kelei Han, Ying Chen, Chao Ma, Shuzhen Hu, Wei Zhao, Fang Wang

Abstract read
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In one paragraph

Article in Archives of virology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Dankan Yan *Institute of Plant Protection and Agro-Products Safety, Anhui Academy of Agricultural Sciences, 230031, Hefei, Anhui, China.
Kelei Han *Institute of Plant Protection and Agro-Products Safety, Anhui Academy of Agricultural Sciences, 230031, Hefei, Anhui, China.
Ying ChenInstitute of Plant Protection and Agro-Products Safety, Anhui Academy of Agricultural Sciences, 230031, Hefei, Anhui, China.
Chao MaInstitute of Plant Protection and Agro-Products Safety, Anhui Academy of Agricultural Sciences, 230031, Hefei, Anhui, China.
Shuzhen HuInstitute of Plant Protection and Agro-Products Safety, Anhui Academy of Agricultural Sciences, 230031, Hefei, Anhui, China.
Wei ZhaoInstitute of Plant Protection and Agro-Products Safety, Anhui Academy of Agricultural Sciences, 230031, Hefei, Anhui, China. bioplay@sina.com.
Fang WangInstitute of Plant Protection and Agro-Products Safety, Anhui Academy of Agricultural Sciences, 230031, Hefei, Anhui, China. wangfang1378@126.com.ORCID http://orcid.org/0000-0003-0217-8585

Funding

Hefei Postdoctoral Research Activities Foundation Hefei Postdoctoral Research Activities FoundationNatural Science Foundation of Anhui Province 1908085QC107Natural Science Foundation of Anhui Province 2008085MC74Transformation and Application Special Project in Agricultural Scientific and Technological Achievements of Anhui Province 2022ZH003
6 · The paper itself

Abstract

Wheat plants with yellow stripes on their leaves were collected in the city of Tai'an (Shandong province, China). High-throughput sequencing analysis of the collected plants showed that they were coinfected with wheat leaf yellowing-associated virus (WLYaV) and an unidentified polerovirus. The genome of the unidentified virus, tentatively named "triticum yellow stripe virus" (TriYSV), comprises 5,595 nucleotides and contains seven open reading frames (ORFs), with a typical polerovirus genome structure. Analysis by sequence alignment showed that TriYSV had the highest sequence similarity to wheat yellow dwarf virus (WYDV, a tentative member of the genus Polerovirus), with 87.3% nucleotide sequence identity over the whole genome. Except for P3a and the coat protein (CP), all of the proteins encoded by TriYSV showed < 90% amino acid identity to those of other poleroviruses. Phylogenetic analysis based on RNA-dependent RNA polymerase and CP amino acid sequences and complete genome nucleotide sequences showed that the poleroviruses WYDV, cereal yellow dwarf virus RPS (CYDV-RPS), CYDV-RPV, and barley yellow dwarf virus GPV are the most closely related to TriYSV. Thus, TriYSV is proposed to be a new member of the genus Polerovirus.

Indexed as

LuteoviridaeChinaGenome, ViralOpen Reading FramesPhylogenyPlant DiseasesTriticum

Identifiers

PMID37083847

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.