Evidence map›Paper›PMID 37083132›Full record

ArticleDevelopmental dynamics : an official publication of the American Association of Anatomists2024

Zebrafish smarcc1a mutants reveal requirements for BAF chromatin remodeling complexes in distinguishing the atrioventricular canal from the cardiac chambers.

Heidi J Auman, Ivy H Fernandes, César A Berríos-Otero, Sophie Colombo, Deborah Yelon

Open access · bronzeAbstract read
In one paragraph

Article in Developmental dynamics : an official publication of the American Association of Anatomists, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.9field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 6 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Heidi J AumanSkirball Institute, New York University School of Medicine, New York, New York, USA.
Ivy H FernandesSchool of Biological Sciences, University of California, San Diego, La Jolla, California, USA.
César A Berríos-OteroSkirball Institute, New York University School of Medicine, New York, New York, USA.
Sophie ColomboSkirball Institute, New York University School of Medicine, New York, New York, USA.
Deborah YelonSkirball Institute, New York University School of Medicine, New York, New York, USA.ORCID 0000-0003-3523-4053
New York University · USUniversity of California San Diego · US

Funding

GENETIC MECHANISMS AND REGULATIONT32GM007240 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI HAMPTON, RANDOLPH Y. · 1985 to 2019
$23.8M
Pathways in Biological Sciences Training ProgramT32GM133351 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Matthew Daugherty, Randolph Y. Hampton · 2020 to 2026
$9.9M
Regulation of cardiac chamber morphogenesis in zebrafishR01HL081911 · NHLBI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI YELON, DEBORAH · 2005 to 2008
$1.5M
Genetic Analysis of Myocardial Patterning in ZebrafishF32HL076061 · NHLBI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI AUMAN, HEIDI J · 2004 to 2006
$142k
Regulation of cardiac patterning by the BAF complex subunit Smarcc1aF31HL160140 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI FERNANDES, IVY · 2021 to 2023
$119k
NHLBI NIH HHS F31 HL160140NHLBI NIH HHS F32 HL076061NHLBI NIH HHS R01 HL081911NIGMS NIH HHS T32 GM007240NIGMS NIH HHS T32 GM133351NIH HHS F31 HL160140NIH HHS F32 HL076061NIH HHS R01 HL081911NIH HHS T32 GM007240NIH HHS T32 GM133351
6 · The paper itself

Abstract

backgroundEssential patterning processes transform the heart tube into a compartmentalized organ with distinct chambers separated by an atrioventricular canal (AVC). This transition involves the refinement of expression of genes that are first found broadly throughout the heart tube and then become restricted to the AVC. Despite the importance of cardiac patterning, we do not fully understand the mechanisms that limit gene expression to the AVC.

resultsWe show that the zebrafish gene smarcc1a, encoding a BAF chromatin remodeling complex subunit homologous to mammalian BAF155, is critical for cardiac patterning. In smarcc1a mutants, myocardial differentiation and heart tube assembly appear to proceed normally. Subsequently, the smarcc1a mutant heart fails to exhibit refinement of gene expression patterns to the AVC, and the persistence of broad gene expression is accompanied by failure of chamber expansion. In addition to their cardiac defects, smarcc1a mutants lack pectoral fins, indicating similarity to tbx5a mutants. However, comparison of smarcc1a and tbx5a mutants suggests that perturbation of tbx5a function is not sufficient to cause the smarcc1a mutant phenotype.

conclusionsOur data indicate an important role for Smarcc1a-containing chromatin remodeling complexes in regulating the changes in gene expression and morphology that distinguish the AVC from the cardiac chambers.

Indexed as

Endocardial CushionsZebrafishAnimalsChromatin Assembly and DisassemblyGene Expression Regulation, DevelopmentalHeartHeart Septal DefectsMammalsTranscription FactorsZebrafish ProteinsTranscription FactorsZebrafish ProteinsBAF155cardiac morphogenesiscardiac patterningTbx5

Identifiers

PMID37083132
PMCPMC10589389
OpenAlexW4366602824

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.