Evidence map›Paper›PMID 37082144›Full record

ArticleCell genomics2023

Widespread epistasis among beneficial genetic variants revealed by high-throughput genome editing.

Roy Moh Lik Ang, Shi-An A Chen, Alexander F Kern, Yihua Xie, Hunter B Fraser

Abstract read
In one paragraph

Article in Cell genomics, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Roy Moh Lik AngDepartment of Genetics, Stanford University, Stanford, CA 94305, USA.
Shi-An A ChenDepartment of Biology, Stanford University, Stanford, CA 94305, USA.
Alexander F KernDepartment of Genetics, Stanford University, Stanford, CA 94305, USA.
Yihua XieDepartment of Biology, Stanford University, Stanford, CA 94305, USA.
Hunter B FraserDepartment of Biology, Stanford University, Stanford, CA 94305, USA.

Funding

Supplement to Enhance Wellness and Resiliency in the Graduate EnvironmentT32GM007276 · NIGMS · STANFORD UNIVERSITY · PI MORRISON, ASHBY J. · 1985 to 2023
$32.9M
INSTITUTIONAL TRAINING GRANT IN GENOME SCIENCET32HG000044 · NHGRI · STANFORD UNIVERSITY · PI MICHAEL P. SNYDER · 1995 to 2026
$32.2M
Yeast as a model for understanding gene expression adaptationR01GM097171 · NIGMS · STANFORD UNIVERSITY · PI FRASER, HUNTER B · 2012 to 2024
$4.2M
High-throughput precision genome editing to characterize natural genetic variantsR01GM134228 · NIGMS · STANFORD UNIVERSITY · PI FRASER, HUNTER B · 2019 to 2022
$1.8M
Direct measurement of gene-environment interactions by high-throughput precision genome editingF31ES030282 · NIEHS · STANFORD UNIVERSITY · PI CHEN, SHI-AN ANDERSON · 2019 to 2021
$89k
NHGRI NIH HHS T32 HG000044NIEHS NIH HHS F31 ES030282NIGMS NIH HHS R01 GM097171NIGMS NIH HHS R01 GM134228NIGMS NIH HHS T32 GM007276
6 · The paper itself

Abstract

The phenotypic effect of any genetic variant can be altered by variation at other genomic loci. Known as epistasis, these genetic interactions shape the genotype-phenotype map of every species, yet their origins remain poorly understood. To investigate this, we employed high-throughput genome editing to measure the fitness effects of 1,826 naturally polymorphic variants in four strains of

Indexed as

background effectbeneficial variantscomplex traitsepistasisevolutiongenetic interactionsnatural variationprecision editingyeast

Identifiers

PMID37082144
PMCPMC10112194

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.