Evidence map›Paper›PMID 37080992›Full record

ArticleNature communications2023

Structural insights into RNase J that plays an essential role in Mycobacterium tuberculosis RNA metabolism.

Luyao Bao, Juan Hu, Bowen Zhan, Mingzhe Chi, Zhengyang Li, Sen Wang, Chan Shan, Zhaozhao Zhao, Yanchao Guo, Xiaoming Ding and 6 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 12 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. The Structural and Molecular Mechanisms ofMolecules (Basel, Switzerland) · 2024
    Review
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 3 institutions in 1 country.

Luyao Bao *State Key Laboratory of Genetic Engineering, School of Life Sciences and Huashan Hospital, Shanghai Engineering Research Center of Industrial Microorganisms, Engineering Research Center of Gene Technology of MOE, Fudan University, 200438, Shanghai, China.
Juan Hu *State Key Laboratory of Genetic Engineering, School of Life Sciences and Huashan Hospital, Shanghai Engineering Research Center of Industrial Microorganisms, Engineering Research Center of Gene Technology of MOE, Fudan University, 200438, Shanghai, China.
Bowen Zhan *State Key Laboratory of Genetic Engineering, School of Life Sciences and Huashan Hospital, Shanghai Engineering Research Center of Industrial Microorganisms, Engineering Research Center of Gene Technology of MOE, Fudan University, 200438, Shanghai, China.
Mingzhe ChiState Key Laboratory of Genetic Engineering, School of Life Sciences and Huashan Hospital, Shanghai Engineering Research Center of Industrial Microorganisms, Engineering Research Center of Gene Technology of MOE, Fudan University, 200438, Shanghai, China.
Zhengyang LiState Key Laboratory of Genetic Engineering, School of Life Sciences and Huashan Hospital, Shanghai Engineering Research Center of Industrial Microorganisms, Engineering Research Center of Gene Technology of MOE, Fudan University, 200438, Shanghai, China.
Sen WangState Key Laboratory of Genetic Engineering, School of Life Sciences and Huashan Hospital, Shanghai Engineering Research Center of Industrial Microorganisms, Engineering Research Center of Gene Technology of MOE, Fudan University, 200438, Shanghai, China.
Chan ShanState Key Laboratory of Genetic Engineering, School of Life Sciences, Fudan University, 200438, Shanghai, China.
Zhaozhao ZhaoState Key Laboratory of Genetic Engineering, School of Life Sciences, Fudan University, 200438, Shanghai, China.
Yanchao GuoState Key Laboratory of Genetic Engineering, School of Life Sciences and Huashan Hospital, Shanghai Engineering Research Center of Industrial Microorganisms, Engineering Research Center of Gene Technology of MOE, Fudan University, 200438, Shanghai, China.ORCID 0000-0002-4146-5168
Xiaoming DingState Key Laboratory of Genetic Engineering, School of Life Sciences, Fudan University, 200438, Shanghai, China.
Chaoneng JiState Key Laboratory of Genetic Engineering, School of Life Sciences and Huashan Hospital, Shanghai Engineering Research Center of Industrial Microorganisms, Engineering Research Center of Gene Technology of MOE, Fudan University, 200438, Shanghai, China.
Shengce TaoKey Laboratory of Systems Biomedicine (Ministry of Education), Shanghai Center for Systems Biomedicine, Shanghai Jiao Tong University, 200240, Shanghai, China.ORCID 0000-0002-9210-1823
Ting NiState Key Laboratory of Genetic Engineering, School of Life Sciences, Fudan University, 200438, Shanghai, China.ORCID 0000-0001-7007-1072
Xuelian ZhangState Key Laboratory of Genetic Engineering, School of Life Sciences, Fudan University, 200438, Shanghai, China. xuelianzhang@fudan.edu.cn.ORCID 0000-0002-4999-3598
Guoping ZhaoState Key Laboratory of Genetic Engineering, School of Life Sciences, Fudan University, 200438, Shanghai, China. gpzhao@sibs.ac.cn.ORCID 0000-0002-7621-6620
Jixi LiState Key Laboratory of Genetic Engineering, School of Life Sciences and Huashan Hospital, Shanghai Engineering Research Center of Industrial Microorganisms, Engineering Research Center of Gene Technology of MOE, Fudan University, 200438, Shanghai, China. lijixi@fudan.edu.cn.ORCID 0000-0003-3463-3175
Fudan University · CNChinese Academy of Sciences · CNShanghai Jiao Tong University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Ribonucleases (RNases) are responsible for RNA metabolism. RNase J, the core enzyme of the RNA degradosome, plays an essential role in global mRNA decay. Emerging evidence showed that the RNase J of Mycobacterium tuberculosis (Mtb-RNase J) could be an excellent target for treating Mtb infection. Here, crystal structures of Mtb-RNase J in apo-state and complex with the single-strand RNA reveal the conformational change upon RNA binding and hydrolysis. Mtb-RNase J forms an active homodimer through the interactions between the β-CASP and the β-lactamase domain. Knockout of RNase J slows the growth rate and changes the colony morphologies and cell length in Mycobacterium smegmatis, which is restored by RNase J complementation. Finally, RNA-seq analysis shows that the knockout strain significantly changes the expression levels of 49 genes in metabolic pathways. Thus, our current study explores the structural basis of Mtb-RNase J and might provide a promising candidate in pharmacological treatment for tuberculosis.

Indexed as

Mycobacterium tuberculosisRibonucleasesHydrolysisRibonuclease, PancreaticRNARibonuclease, PancreaticRibonucleasesRNA

Identifiers

PMID37080992
PMCPMC10119312
OpenAlexW4366594978

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.