Evidence map›Paper›PMID 37079883›Full record

ArticleMolecular biology and evolution2023

SAG-RAD: A Method for Single-Cell Population Genomics of Unicellular Eukaryotes.

Raphael Gollnisch, Joel Wallenius, Kristin E Gribble, Dag Ahrén, Karin Rengefors

Abstract read
In one paragraph

Article in Molecular biology and evolution, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Raphael GollnischDepartment of Biology, Aquatic Ecology, Lund University, Lund, Sweden.ORCID 0000-0001-6177-8877
Joel WalleniusFaculty of Medicine, Department of Clinical Sciences, Lund University, Lund, Sweden.
Kristin E GribbleMarine Biological Laboratory, Woods Hole, MA, USA.
Dag AhrénNational Bioinformatics Infrastructure Sweden (NBIS), SciLifeLab, Department of Biology, Lund University, Lund, Sweden.
Karin RengeforsDepartment of Biology, Aquatic Ecology, Lund University, Lund, Sweden.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Sequencing of reduced representation libraries enables genotyping of many individuals for population genomic studies. However, high amounts of DNA are required, and the method cannot be applied directly on single cells, preventing its use on most microbes. We developed and implemented the analysis of single amplified genomes followed by restriction-site-associated DNA sequencing to bypass labor-intensive culturing and to avoid culturing bias in population genomic studies of unicellular eukaryotes. This method thus opens the way for addressing important questions about the genetic diversity, gene flow, adaptation, dispersal, and biogeography of hitherto unexplored species.

Indexed as

EukaryotaMetagenomicsGenomeGenomicsSequence Analysis, DNAculturing biasmicrobial genetic diversitymicroeukaryotesrestriction-site associated DNA (RAD) sequencingsingle amplified genome (SAG)whole-genome amplification (WGA)

Identifiers

PMID37079883
PMCPMC10202595

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.