Evidence map›Paper›PMID 37079666›Full record

ArticleScience (New York, N.Y.)2023

Induction of lysosomal and mitochondrial biogenesis by AMPK phosphorylation of FNIP1.

Nazma Malik, Bibiana I Ferreira, Pablo E Hollstein, Stephanie D Curtis, Elijah Trefts, Sammy Weiser Novak, Jingting Yu, Rebecca Gilson, Kristina Hellberg, Lingjing Fang and 5 more

Open access · greenAbstract read
In one paragraph

Article in Science (New York, N.Y.), 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 150 papers.

0numbers the graph read from it
0cells of the map it votes in
150citing papers in PubMed
28.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

150 citing papers in PubMed, 182 citations in OpenAlex.

  1. Lipophagy and lipid droplets in neurodegeneration.Trends in pharmacological sciences · 2026
    Review
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Selective autophagy in kidney health and disease.Nature reviews. Nephrology · 2026
    Review
  11. Review
  12. Article
  13. Review
  14. Article
  15. Review
  16. Review
  17. Review
  18. Review
  19. Article
  20. Review

90 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 1 institution in 1 country.

Nazma MalikMolecular and Cell Biology Laboratory, The Salk Institute for Biological Studies, La Jolla, CA, USA.ORCID 0000-0002-8478-8944
Bibiana I FerreiraMolecular and Cell Biology Laboratory, The Salk Institute for Biological Studies, La Jolla, CA, USA.ORCID 0000-0003-4772-9395
Pablo E HollsteinMolecular and Cell Biology Laboratory, The Salk Institute for Biological Studies, La Jolla, CA, USA.ORCID 0000-0002-7323-505X
Stephanie D CurtisMolecular and Cell Biology Laboratory, The Salk Institute for Biological Studies, La Jolla, CA, USA.ORCID 0000-0002-0765-3114
Elijah TreftsMolecular and Cell Biology Laboratory, The Salk Institute for Biological Studies, La Jolla, CA, USA.ORCID 0000-0002-0599-1486
Sammy Weiser NovakBiophotonics Core, The Salk Institute for Biological Studies, La Jolla, CA, USA.ORCID 0000-0002-8344-9772
Jingting YuBioinformatics Core, The Salk Institute for Biological Studies, La Jolla, CA, USA.
Rebecca GilsonBiophotonics Core, The Salk Institute for Biological Studies, La Jolla, CA, USA.
Kristina HellbergMolecular and Cell Biology Laboratory, The Salk Institute for Biological Studies, La Jolla, CA, USA.
Lingjing FangBiophotonics Core, The Salk Institute for Biological Studies, La Jolla, CA, USA.ORCID 0000-0003-2232-2601
Arlo SheridanBiophotonics Core, The Salk Institute for Biological Studies, La Jolla, CA, USA.ORCID 0000-0003-2907-2254
Nasun HahNext Generation Sequencing Core, The Salk Institute for Biological Studies, La Jolla, CA, USA.ORCID 0000-0003-1509-2799
Gerald S ShadelMolecular and Cell Biology Laboratory, The Salk Institute for Biological Studies, La Jolla, CA, USA.ORCID 0000-0003-2899-8717
Uri ManorBiophotonics Core, The Salk Institute for Biological Studies, La Jolla, CA, USA.ORCID 0000-0002-9802-1955
Reuben J ShawMolecular and Cell Biology Laboratory, The Salk Institute for Biological Studies, La Jolla, CA, USA.ORCID 0000-0002-1555-8977
Salk Institute for Biological Studies · US

Funding

Viral Vector Core (VVC)P30CA014195 · NCI · SALK INSTITUTE FOR BIOLOGICAL STUDIES · PI Reuben Shaw · 1985 to 2026
$82.8M
Tuberous Sclerosis-Pathway and PathogenesisP01CA120964 · NCI · BRIGHAM AND WOMEN'S HOSPITAL · PI David J. Kwiatkowski · 2007 to 2026
$35.9M
Decoding And Targeting The LKB1-AMPK Signaling Pathway In CancerR35CA220538 · NCI · SALK INSTITUTE FOR BIOLOGICAL STUDIES · PI Reuben Shaw · 2017 to 2026
$11.3M
San Diego Nathan Shock CenterP30AG068635 · NIA · SALK INSTITUTE FOR BIOLOGICAL STUDIES · PI SHADEL, GERALD · 2020 to 2024
$6.0M
Role of LKB1 and AMPK in Metformin and TZD Control of Glucose Metabolism in LiverR01DK080425 · NIDDK · SALK INSTITUTE FOR BIOLOGICAL STUDIES · PI SHAW, REUBEN · 2007 to 2015
$3.6M
A Novel Model System for Restoring Hearing in vivoR21DC018237 · NIDCD · SALK INSTITUTE FOR BIOLOGICAL STUDIES · PI COLEMAN, TODD P, KYRIAKAKIS, PHILLIP · 2020 to 2021
$505k
FUNCTIONAL ANALYSIS OF THE PEUTZ JEGHERS SYNDROME KINASEF32CA088452 · NCI · BETH ISRAEL DEACONESS MEDICAL CENTER · PI SHAW, REUBEN J · 2000 to 2002
$119k
NCI NIH HHS F32 CA088452NCI NIH HHS P01 CA120964NCI NIH HHS P30 CA014195NCI NIH HHS R35 CA220538NIA NIH HHS P30 AG068635NIDCD NIH HHS R21 DC018237NIDDK NIH HHS R01 DK080425
6 · The paper itself

Abstract

Cells respond to mitochondrial poisons with rapid activation of the adenosine monophosphate-activated protein kinase (AMPK), causing acute metabolic changes through phosphorylation and prolonged adaptation of metabolism through transcriptional effects. Transcription factor EB (TFEB) is a major effector of AMPK that increases expression of lysosome genes in response to energetic stress, but how AMPK activates TFEB remains unresolved. We demonstrate that AMPK directly phosphorylates five conserved serine residues in folliculin-interacting protein 1 (FNIP1), suppressing the function of the folliculin (FLCN)-FNIP1 complex. FNIP1 phosphorylation is required for AMPK to induce nuclear translocation of TFEB and TFEB-dependent increases of peroxisome proliferator-activated receptor gamma coactivator 1-alpha (PGC1α) and estrogen-related receptor alpha (ERRα) messenger RNAs. Thus, mitochondrial damage triggers AMPK-FNIP1-dependent nuclear translocation of TFEB, inducing sequential waves of lysosomal and mitochondrial biogenesis.

Indexed as

AMP-Activated Protein KinasesLysosomesMitochondriaOrganelle BiogenesisCarrier ProteinsHumansPeroxisome Proliferator-Activated Receptor Gamma Coactivator 1-alphaPhosphorylationProtein Processing, Post-TranslationalAMP-Activated Protein KinasesCarrier ProteinsFNIP1 protein, humanPeroxisome Proliferator-Activated Receptor Gamma Coactivator 1-alpha

Identifiers

PMID37079666
PMCPMC10794112
OpenAlexW4366507114

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.