Evidence map›Paper›PMID 37079643›Full record

ArticlePLoS biology2023

Exo1 protects DNA nicks from ligation to promote crossover formation during meiosis.

Michael Gioia, Lisette Payero, Sagar Salim, Ghanim Fajish V, Amamah F Farnaz, Gianno Pannafino, Jun Jie Chen, V P Ajith, Sherikat Momoh, Michelle Scotland and 5 more

Open access · goldAbstract read
In one paragraph

Article in PLoS biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
2.5field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 17 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 4 institutions in 3 countries.

Michael GioiaDepartment of Molecular Biology and Genetics, Cornell University, Ithaca, New York, United States of America.
Lisette PayeroDepartment of Molecular Biology and Genetics, Cornell University, Ithaca, New York, United States of America.
Sagar SalimSchool of Biology, Indian Institute of Science Education and Research Thiruvananthapuram, Trivandrum, India.
Ghanim Fajish VInstitute for Protein Research, Osaka University, Suita, Osaka, Japan.
Amamah F FarnazSchool of Biology, Indian Institute of Science Education and Research Thiruvananthapuram, Trivandrum, India.
Gianno PannafinoDepartment of Molecular Biology and Genetics, Cornell University, Ithaca, New York, United States of America.
Jun Jie ChenDepartment of Molecular Biology and Genetics, Cornell University, Ithaca, New York, United States of America.
V P AjithSchool of Biology, Indian Institute of Science Education and Research Thiruvananthapuram, Trivandrum, India.
Sherikat MomohDepartment of Molecular Biology and Genetics, Cornell University, Ithaca, New York, United States of America.
Michelle ScotlandDepartment of Molecular Biology and Genetics, Cornell University, Ithaca, New York, United States of America.
Vandana RaghavanDepartment of Molecular Biology and Genetics, Cornell University, Ithaca, New York, United States of America.
Carol M ManhartDepartment of Chemistry, Temple University, Philadelphia, Pennsylvania, United States of America.
Akira ShinoharaInstitute for Protein Research, Osaka University, Suita, Osaka, Japan.
K T NishantSchool of Biology, Indian Institute of Science Education and Research Thiruvananthapuram, Trivandrum, India.
Eric AlaniDepartment of Molecular Biology and Genetics, Cornell University, Ithaca, New York, United States of America.ORCID 0000-0002-5011-9339
Cornell University · USIndian Institute of Science Education and Research Thiruvananthapuram · INProtein Research Foundation · JPTemple University · US

Funding

PREDOCTORAL TRAINING IN GENETICS AND DEVELOPMENTT32GM007617 · NIGMS · CORNELL UNIVERSITY ITHACA · PI BARBASH, DANIEL A · 1985 to 2021
$5.5M
Roles for Mismatch Repair Proteins in Maintaining Genome StabilityR35GM134872 · NIGMS · CORNELL UNIVERSITY · PI Eric E. Alani · 2020 to 2026
$2.8M
Characterizing an Endonuclease Ensemble in Meiotic Crossing OverF32GM112435 · NIGMS · CORNELL UNIVERSITY · PI MANHART, CAROL M · 2014 to 2016
$164k
Uncovering the Role of Exo1 in Meiotic RecombinationF31GM145163 · NIGMS · CORNELL UNIVERSITY · PI PAYERO, LISETTE · 2022 to 2024
$98k
NIGMS NIH HHS F31 GM145163NIGMS NIH HHS F32 GM112435NIGMS NIH HHS R35 GM134872NIGMS NIH HHS T32 GM007617
6 · The paper itself

Abstract

In most sexually reproducing organisms crossing over between chromosome homologs during meiosis is essential to produce haploid gametes. Most crossovers that form in meiosis in budding yeast result from the biased resolution of double Holliday junction (dHJ) intermediates. This dHJ resolution step involves the actions of Rad2/XPG family nuclease Exo1 and the Mlh1-Mlh3 mismatch repair endonuclease. Here, we provide genetic evidence in baker's yeast that Exo1 promotes meiotic crossing over by protecting DNA nicks from ligation. We found that structural elements in Exo1 that interact with DNA, such as those required for the bending of DNA during nick/flap recognition, are critical for its role in crossing over. Consistent with these observations, meiotic expression of the Rad2/XPG family member Rad27 partially rescued the crossover defect in exo1 null mutants, and meiotic overexpression of Cdc9 ligase reduced the crossover levels of exo1 DNA-binding mutants to levels that approached the exo1 null. In addition, our work identified a role for Exo1 in crossover interference. Together, these studies provide experimental evidence for Exo1-protected nicks being critical for the formation of meiotic crossovers and their distribution.

Indexed as

Saccharomyces cerevisiae ProteinsCrossing Over, GeneticDNA Breaks, Single-StrandedDNA, CruciformExodeoxyribonucleasesFlap EndonucleasesMeiosisSaccharomyces cerevisiaeDNA, Cruciformexodeoxyribonuclease IExodeoxyribonucleasesFlap EndonucleasesRAD27 protein, S cerevisiaeSaccharomyces cerevisiae Proteins

Identifiers

PMID37079643
PMCPMC10153752
OpenAlexW4366462996

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.