Evidence map›Paper›PMID 37079572›Full record

ArticlePloS one2023

Biochemical characterization of a GDP-mannose transporter from Chaetomium thermophilum.

Gowtham Thambra Rajan Premageetha, KanagaVijayan Dhanabalan, Sucharita Bose, Lavanyaa Manjunath, Deepthi Joseph, Aviv Paz, Samuel Grandfield, Vinod Nayak, Luis M Bredeston, Jeff Abramson and 1 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact, top 87% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 0 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 3 countries.

Gowtham Thambra Rajan PremageethaBiological Sciences, Purdue University, West Lafayette, Indiana, United States of America.ORCID 0000-0003-2265-2715
KanagaVijayan DhanabalanBiological Sciences, Purdue University, West Lafayette, Indiana, United States of America.
Sucharita BoseInstitute for Stem Cell Science and Regenerative Medicine, Bengaluru, Karnataka, India.ORCID 0000-0003-4617-0577
Lavanyaa ManjunathInstitute for Stem Cell Science and Regenerative Medicine, Bengaluru, Karnataka, India.
Deepthi JosephInstitute for Stem Cell Science and Regenerative Medicine, Bengaluru, Karnataka, India.
Aviv PazDepartment of Physiology, David Geffen School of Medicine at UCLA, Los Angeles, CA, United States of America.ORCID 0000-0003-0792-492X
Samuel GrandfieldDepartment of Physiology, David Geffen School of Medicine at UCLA, Los Angeles, CA, United States of America.ORCID 0000-0002-4512-6593
Vinod NayakInstitute for Stem Cell Science and Regenerative Medicine, Bengaluru, Karnataka, India.ORCID 0000-0003-1857-9842
Luis M BredestonDepartamento de Química Biológica-IQUIFIB, Facultad de Farmacia y Bioquímica, Universidad de Buenos Aires-CONICET, Ciudad Autónoma de Buenos Aires, Junín, Argentina.
Jeff AbramsonDepartment of Physiology, David Geffen School of Medicine at UCLA, Los Angeles, CA, United States of America.
Subramanian RamaswamyBiological Sciences, Purdue University, West Lafayette, Indiana, United States of America.ORCID 0000-0002-6709-190X
Institute for Stem Cell Biology and Regenerative Medicine · INUniversity of California, Los Angeles · USPurdue University West Lafayette · USConsejo Nacional de Investigaciones Científicas y Técnicas · ARManipal Academy of Higher Education · IN

Funding

Deciphering molecular details of cellular sugar transport and their roles in diseaseR35GM135175 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI ABRAMSON, JEFFREY S · 2020 to 2024
$3.9M
NIGMS NIH HHS R35 GM135175
6 · The paper itself

Abstract

Nucleotide Sugar Transporters (NSTs) belong to the SLC35 family (human solute carrier) of membrane transport proteins and are crucial components of the glycosylation machinery. NSTs are localized in the ER and Golgi apparatus membranes, where they accumulate nucleotide sugars from the cytosol for subsequent polysaccharide biosynthesis. Loss of NST function impacts the glycosylation of cell surface molecules. Mutations in NSTs cause several developmental disorders, immune disorders, and increased susceptibility to infection. Atomic resolution structures of three NSTs have provided a blueprint for a detailed molecular interpretation of their biochemical properties. In this work, we have identified, cloned, and expressed 18 members of the SLC35 family from various eukaryotic organisms in Saccharomyces cerevisiae. Out of 18 clones, we determined Vrg4 from Chaetomium thermophilum (CtVrg4) is a GDP-mannose transporter with an enhanced melting point temperature (Tm) of 56.9°C, which increases with the addition of substrates, GMP and GDP-mannose. In addition, we report-for the first time-that the CtVrg4 shows an affinity to bind to phosphatidylinositol lipids.

Indexed as

Carrier ProteinsSaccharomyces cerevisiae ProteinsBiological TransportChaetomiumGlycosylationGolgi ApparatusHumansMembrane Transport ProteinsNucleotidesSaccharomyces cerevisiaeCarrier ProteinsGDP-mannose transporterMembrane Transport ProteinsNucleotidesSaccharomyces cerevisiae ProteinsVRG4 protein, S cerevisiae

Identifiers

PMID37079572
PMCPMC10118193
OpenAlexW4366463223

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.