Evidence map›Paper›PMID 37076818›Full record

ArticleBMC genomics2023

Genomic insight of sulfate reducing bacterial genus Desulfofaba reveals their metabolic versatility in biogeochemical cycling.

Ping Gao, Xiaoting Zhang, Xiaomei Huang, Zhiyi Chen, Angeliki Marietou, Lars Holmkvist, Lingyun Qu, Kai Finster, Xianzhe Gong

Abstract read
In one paragraph

Article in BMC genomics, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
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  3. Influence ofInternational journal of molecular sciences · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Ping GaoKey Laboratory of Marine Eco-Environmental Science and Technology, First Institute of Oceanography, Ministry of Natural Resources (MNR), 266061, Qingdao, PR China.
Xiaoting ZhangInstitute of Marine Science and Technology, Shandong University, 266237, Qingdao, PR China.
Xiaomei HuangInstitute of Marine Science and Technology, Shandong University, 266237, Qingdao, PR China.
Zhiyi ChenInstitute of Marine Science and Technology, Shandong University, 266237, Qingdao, PR China.
Angeliki MarietouSection for Microbiology, Department of Biology, Aarhus University, 8000, Aarhus, Denmark.
Lars HolmkvistSection for Microbiology, Department of Biology, Aarhus University, 8000, Aarhus, Denmark.
Lingyun QuKey Laboratory of Marine Eco-Environmental Science and Technology, First Institute of Oceanography, Ministry of Natural Resources (MNR), 266061, Qingdao, PR China.
Kai FinsterSection for Microbiology, Department of Biology, Aarhus University, 8000, Aarhus, Denmark.
Xianzhe GongInstitute of Marine Science and Technology, Shandong University, 266237, Qingdao, PR China. xianzhe.gong@gmail.com.ORCID http://orcid.org/0000-0001-8026-3123

Funding

National Natural Science Foundation of China 42006134National Natural Science Foundation of China 42106153National Natural Science Foundation of China 91951202
6 · The paper itself

Abstract

backgroundSulfate-reducing bacteria (SRB) drive the ocean sulfur and carbon cycling. They constitute a diverse phylogenetic and physiological group and are widely distributed in anoxic marine environments. From a physiological viewpoint, SRB's can be categorized as complete or incomplete oxidizers, meaning that they either oxidize their carbon substrate completely to CO

resultsHere, we sequenced the genomes of three isolates in Desulfofaba genus and reported on a genomic comparison of the three species to reveal their metabolic potentials. Based on their genomic contents, they all could oxidize propionate to acetate and CO

conclusionsResults based on marker gene search and curated metagenome assembled genomes search suggest a limited environmental distribution of this genus. Our results reveal a large metabolic versatility within the Desulfofaba genus which establishes their importance in biogeochemical cycling of carbon in their respective habitats, as well as in the support of the entire microbial community through releasing easily degraded organic matters.

Indexed as

Carbon DioxideSulfatesBacteriaCarbonGenomicsOxidation-ReductionPhylogenyCarbonCarbon DioxideSulfatesDesulfofabaGenomeIncomplete sulfate reducerNitrogenOxygenSulfur

Identifiers

PMID37076818
PMCPMC10116758

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.