Evidence map›Paper›PMID 37074804›Full record

ArticleSystematic biology2023

Species Delimitation, Phylogenomics, and Biogeography of Sulawesi Flying Lizards: A Diversification History Complicated by Ancient Hybridization, Cryptic Species, and Arrested Speciation.

Jimmy A Mcguire, Xiaoting Huang, Sean B Reilly, Djoko T Iskandar, Cynthia Y Wang-Claypool, Sarah Werning, Rebecca A Chong, Shobi Z S Lawalata, Alexander L Stubbs, Jeffrey H Frederick and 10 more

Open access · hybridAbstract read
In one paragraph

Article in Systematic biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
5.5field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 34 citations in OpenAlex.

  1. Article
  2. Article
  3. When islands collide: Divergence predicts outcomes of secondary contact during the fusion of Sulawesi's paleo-archipelago.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  4. Review
  5. Article
  6. Article
  7. Distinguishing species boundaries from geographic variation.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Phylogeny and species delimitation of ciliates in the genusbioRxiv : the preprint server for biology · 2024
    Article
  13. Article
  14. Morphological Species Delimitation in The Western Pond Turtle (Integrative organismal biology (Oxford, England) · 2024
    Article
  15. Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 12 institutions in 7 countries.

Jimmy A McguireMuseum of Vertebrate Zoology, University of California, Berkeley, CA 94720, USA.ORCID 0000-0002-9562-5585
Xiaoting HuangCollege of Marine Life Sciences, Ocean University of China, No. 5 Yushan Road, Qindao, Shandong, 266003, PR China.
Sean B ReillyDepartment of Ecology and Evolutionary Biology, University of California, Santa Cruz, CA 95060, USA.ORCID 0000-0003-1661-0543
Djoko T IskandarSchool of Life Sciences and Technology, Institut Teknologi Bandung, Bandung, Indonesia.
Cynthia Y Wang-ClaypoolMuseum of Vertebrate Zoology, University of California, Berkeley, CA 94720, USA.
Sarah WerningDepartment of Anatomy, Des Moines University, 3200 Grand Avenue, Des Moines, IA 50312-4198, USA.
Rebecca A ChongDepartment of Biology, University of Hawaii at Manoa, Honolulu, HI 96822, USA.ORCID 0000-0001-6404-4991
Shobi Z S LawalataMuseum of Vertebrate Zoology, University of California, Berkeley, CA 94720, USA.
Alexander L StubbsMuseum of Vertebrate Zoology, University of California, Berkeley, CA 94720, USA.
Jeffrey H FrederickMuseum of Vertebrate Zoology, University of California, Berkeley, CA 94720, USA.
Rafe M BrownBiodiversity Institute and Department of Ecology and Evolutionary Biology, 1345 Jayhawk Blvd., University of Kansas, Lawrence, KS 66045, USA.
Ben J EvansBiology Department, McMaster University, Hamilton, Ontario, Canada.
Umilaela ArifinMuseum of Vertebrate Zoology, University of California, Berkeley, CA 94720, USA.
Awal RiyantoLaboratory of Herpetology, Museum Zoologicum Bogoriense, Research Center for Biosystematics and Evolution, National Research and Innovation Agency of Indonesia (BRIN), Cibinong 16911, Indonesia.
Amir HamidyLaboratory of Herpetology, Museum Zoologicum Bogoriense, Research Center for Biosystematics and Evolution, National Research and Innovation Agency of Indonesia (BRIN), Cibinong 16911, Indonesia.
Evy AridaResearch Center for Applied Zoology, National Research and Innovation Agency of Indonesia (BRIN), Cibinong 16911, Indonesia.
Michelle S KooMuseum of Vertebrate Zoology, University of California, Berkeley, CA 94720, USA.
Jatna SupriatnaDepartment of Biology, Institute for Sustainable Earth and Resources (I-SER), Gedung Laboratorium Multidisiplin, and Research Center for Climate Change (RCCC-UI), Gedung Laboratorium Multidisiplin, Faculty of Mathematics and Natural Sciences, Universitas Indonesia, Depok 16424, Indonesia.
Noviar AndayaniDepartment of Biology, Institute for Sustainable Earth and Resources (I-SER), Gedung Laboratorium Multidisiplin, and Research Center for Climate Change (RCCC-UI), Gedung Laboratorium Multidisiplin, Faculty of Mathematics and Natural Sciences, Universitas Indonesia, Depok 16424, Indonesia.
Robert HallSE Asia Research Group (SEARG), Department of Earth Sciences, Royal Holloway University of London, Egham, Surrey TW20 0EX, UK.
Museum of Vertebrate Zoology · USNational Nuclear Energy Agency of Indonesia · IDUniversity of Indonesia · IDBandung Institute of Technology · IDDes Moines University · USMcMaster University · CANational Research, Development and Innovation Office · HUOcean University of China · CNRoyal Holloway University of London · GBUniversity of California, Santa Cruz · USUniversity of Hawaiʻi at Mānoa · USUniversity of Kansas · US

Funding

Genome Sequencer FLXS10RR029668 · NCRR · UNIVERSITY OF CALIFORNIA BERKELEY · PI NGAI, JOHN J. · 2010 to 2010
$623k
Illumina Sequencer to Facilitate Functional Genomics at BerkeleyS10RR027303 · NCRR · UNIVERSITY OF CALIFORNIA BERKELEY · PI TAYLOR, JOHN W. · 2010 to 2010
$500k
NCRR NIH HHS S10 RR027303NCRR NIH HHS S10 RR029668
6 · The paper itself

Abstract

The biota of Sulawesi is noted for its high degree of endemism and for its substantial levels of in situ biological diversification. While the island's long period of isolation and dynamic tectonic history have been implicated as drivers of the regional diversification, this has rarely been tested in the context of an explicit geological framework. Here, we provide a tectonically informed biogeographical framework that we use to explore the diversification history of Sulawesi flying lizards (the Draco lineatus Group), a radiation that is endemic to Sulawesi and its surrounding islands. We employ a framework for inferring cryptic speciation that involves phylogeographic and genetic clustering analyses as a means of identifying potential species followed by population demographic assessment of divergence-timing and rates of bi-directional migration as means of confirming lineage independence (and thus species status). Using this approach, phylogenetic and population genetic analyses of mitochondrial sequence data obtained for 613 samples, a 50-SNP data set for 370 samples, and a 1249-locus exon-capture data set for 106 samples indicate that the current taxonomy substantially understates the true number of Sulawesi Draco species, that both cryptic and arrested speciations have taken place, and that ancient hybridization confounds phylogenetic analyses that do not explicitly account for reticulation. The Draco lineatus Group appears to comprise 15 species-9 on Sulawesi proper and 6 on peripheral islands. The common ancestor of this group colonized Sulawesi ~11 Ma when proto-Sulawesi was likely composed of two ancestral islands, and began to radiate ~6 Ma as new islands formed and were colonized via overwater dispersal. The enlargement and amalgamation of many of these proto-islands into modern Sulawesi, especially during the past 3 Ma, set in motion dynamic species interactions as once-isolated lineages came into secondary contact, some of which resulted in lineage merger, and others surviving to the present. [Genomics; Indonesia; introgression; mitochondria; phylogenetics; phylogeography; population genetics; reptiles.].

Indexed as

LizardsAnimalsGenetic SpeciationGenetics, PopulationIndonesiaPhylogenyPhylogeography

Identifiers

PMID37074804
PMCPMC10405571
OpenAlexW4366351311

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.