Evidence map›Paper›PMID 37073225›Full record

ArticleMarine life science & technology2022

Metagenomic analysis reveals wide distribution of phototrophic bacteria in hydrothermal vents on the ultraslow-spreading Southwest Indian Ridge.

Hong Chen, Deng Hui Li, Ai Jun Jiang, Xue Gong Li, Shi Jun Wu, Jian Wei Chen, Meng Jie Qu, Xiao Qing Qi, Jie Dai, Rui Zhao and 3 more

Abstract read
In one paragraph

Article in Marine life science & technology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Hong Chen *Laboratory of Deep Sea Microbial Cell Biology, Institute of Deep Sea Science and Engineering, Chinese Academy of Sciences, Sanya, 572000 China.
Deng Hui Li *Institution of Deep-Sea Life Sciences, IDSSE-BGI, IDSTI-CAS/Hainan Deep-Sea Technology Laboratory, Sanya/Shenzhen, China.
Ai Jun JiangInstitution of Deep-Sea Life Sciences, IDSSE-BGI, IDSTI-CAS/Hainan Deep-Sea Technology Laboratory, Sanya/Shenzhen, China.
Xue Gong LiLaboratory of Deep Sea Microbial Cell Biology, Institute of Deep Sea Science and Engineering, Chinese Academy of Sciences, Sanya, 572000 China.
Shi Jun WuZhejiang University, Hangzhou, 310027 China.
Jian Wei ChenInstitution of Deep-Sea Life Sciences, IDSSE-BGI, IDSTI-CAS/Hainan Deep-Sea Technology Laboratory, Sanya/Shenzhen, China.
Meng Jie QuZhejiang University, Hangzhou, 310027 China.
Xiao Qing QiLaboratory of Deep Sea Microbial Cell Biology, Institute of Deep Sea Science and Engineering, Chinese Academy of Sciences, Sanya, 572000 China.
Jie DaiLaboratory of Deep Sea Microbial Cell Biology, Institute of Deep Sea Science and Engineering, Chinese Academy of Sciences, Sanya, 572000 China.
Rui ZhaoLaboratory of Deep Sea Microbial Cell Biology, Institute of Deep Sea Science and Engineering, Chinese Academy of Sciences, Sanya, 572000 China.
Wei-Jia ZhangLaboratory of Deep Sea Microbial Cell Biology, Institute of Deep Sea Science and Engineering, Chinese Academy of Sciences, Sanya, 572000 China.
Shan Shan LiuInstitution of Deep-Sea Life Sciences, IDSSE-BGI, IDSTI-CAS/Hainan Deep-Sea Technology Laboratory, Sanya/Shenzhen, China.
Long-Fei WuFrance-China Joint Laboratory for Evolution and Development of Magnetotactic Multicellular Organisms (LIA-MagMC), Marseille, France/Sanya, China.ORCID https://orcid.org/0000-0002-8993-4138

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Deep-sea hydrothermal vents are known as chemosynthetic ecosystems. However, high temperature vents emit light that hypothetically can drive photosynthesis in this habitat. Metagenomic studies have sporadically reported the occurrence of phototrophic populations such as cyanobacteria in hydrothermal vents. To determine how geographically and taxonomically widespread phototrophs are in deep-sea hydrothermal vents, we collected samples from three niches in a hydrothermal vent on the Southwest Indian Ridge and carried out an integrated metagenomic analysis. We determined the typical community structures of microorganisms found in active venting fields and identified populations of known potential chlorophototrophs and retinalophototrophs. Complete chlorophyll biosynthetic pathways were identified in all samples. By contrast, proteorhodopsins were only found in active beehive smoker diffusers. Taxonomic groups possessing potential phototrophy dependent on semiconductors present in hydrothermal vents were also found in these samples. This systematic comparative metagenomic study reveals the widespread distribution of phototrophic bacteria in hydrothermal vent fields. Our results support the hypothesis that the ocean is a seed bank of diverse microorganisms. Geothermal vent light may provide energy and confer a competitive advantage on phototrophs to proliferate in hydrothermal vent ecosystems. Supplementary Information: The online version contains supplementary material available at 10.1007/s42995-021-00121-y.

Indexed as

ChlorophyllHydrothermal ventPhototrophic bacteriaRhodopsinSouthwest Indian Ridge

Identifiers

PMID37073225
PMCPMC10077154

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.