Evidence map›Paper›PMID 37072776›Full record

ArticleEnvironmental microbiome2023

Identification of diverse antibiotic resistant bacteria in agricultural soil with H

Marcela Hernández, Shamik Roy, C William Keevil, Marc G Dumont

Open access · goldAbstract read
In one paragraph

Article in Environmental microbiome, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
4.7field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 19 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Metagenomics-metabolomics analysis of microbial function and metabolism in petroleum-contaminated soil.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Marcela HernándezSchool of Biological Sciences, University of Southampton, Southampton, SO17 1BJ, UK.
Shamik RoySchool of Biological Sciences, University of East Anglia, Norwich, NR4 7TJ, UK.
C William KeevilSchool of Biological Sciences, University of Southampton, Southampton, SO17 1BJ, UK.
Marc G DumontSchool of Biological Sciences, University of Southampton, Southampton, SO17 1BJ, UK. m.g.dumont@soton.ac.uk.
University of Southampton · GBUniversity of East Anglia · GB

Funding

Natural Environment Research Council NE/N02026X/1
6 · The paper itself

Abstract

backgroundWe aimed to identify bacteria able to grow in the presence of several antibiotics including the ultra-broad-spectrum antibiotic meropenem in a British agricultural soil by combining DNA stable isotope probing (SIP) with high throughput sequencing. Soil was incubated with cefotaxime, meropenem, ciprofloxacin and trimethoprim in

resultsAn increase of the 16S rRNA copy numbers in the "heavy" fractions of the treatments with

conclusionsThe results indicate that both non-pathogenic soil-dwelling bacteria as well as potential clinical pathogens are present in this agricultural soil and several ARGs were identified from the labelled communities, but it is still unclear if horizontal gene transfer between these groups can occur.

Indexed as

AntibioticsAntimicrobial resistant bacteriaDNA stable isotope probingHigh-throughput sequencingMetagenomicsPathogensSoil

Identifiers

PMID37072776
PMCPMC10111737
OpenAlexW4366275683

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.