Evidence map›Paper›PMID 37072497›Full record

ArticleScientific reports2023

Genomic-regions associated with cold stress tolerance in Asia-adapted tropical maize germplasm.

Kumari Shikha, Vinayan Madhumal Thayil, J P Shahi, P H Zaidi, Kaliyamoorthy Seetharam, Sudha K Nair, Raju Singh, Garg Tosh, Ashok Singamsetti, Saurabh Singh and 1 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
1.6field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
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  4. Plants' Response to Abiotic Stress: Mechanisms and Strategies.International journal of molecular sciences · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 1 country.

Kumari ShikhaDepartment of Genetics and Plant Breeding, Banaras Hindu University (BHU), Varanasi, India.
Vinayan Madhumal ThayilInternational Maize and Wheat Improvement Centre (CIMMYT), ICRISAT Campus, Patancheru, Telangana, India. v.madhumalthayil@cgiar.org.
J P ShahiDepartment of Genetics and Plant Breeding, Banaras Hindu University (BHU), Varanasi, India.
P H ZaidiInternational Maize and Wheat Improvement Centre (CIMMYT), ICRISAT Campus, Patancheru, Telangana, India.
Kaliyamoorthy SeetharamInternational Maize and Wheat Improvement Centre (CIMMYT), ICRISAT Campus, Patancheru, Telangana, India.
Sudha K NairInternational Maize and Wheat Improvement Centre (CIMMYT), ICRISAT Campus, Patancheru, Telangana, India.
Raju SinghBorlaug Institute for South Asia (BISA), Ludhiana, Punjab, India.
Garg ToshPunjab Agricultural University (PAU), Ludhiana, India.
Ashok SingamsettiDepartment of Genetics and Plant Breeding, Banaras Hindu University (BHU), Varanasi, India.
Saurabh SinghDepartment of Genetics and Plant Breeding, Banaras Hindu University (BHU), Varanasi, India.
B SinhaDepartment of Genetics and Plant Breeding, Banaras Hindu University (BHU), Varanasi, India.
Banaras Hindu University · INInternational Crops Research Institute for the Semi-Arid Tropics · INInternational Maize and Wheat Improvement Center · INBorlaug Institute for South Asia · INPunjab Agricultural University · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Maize is gaining impetus in non-traditional and non-conventional seasons such as off-season, primarily due to higher demand and economic returns. Maize varieties directed for growing in the winter season of South Asia must have cold resilience as an important trait due to the low prevailing temperatures and frequent cold snaps observed during this season in most parts of the lowland tropics of Asia. The current study involved screening of a panel of advanced tropically adapted maize lines to cold stress during vegetative and flowering stage under field conditions. A suite of significant genomic loci (28) associated with grain yield along and agronomic traits such as flowering (15) and plant height (6) under cold stress environments. The haplotype regression revealed 6 significant haplotype blocks for grain yield under cold stress across the test environments. Haplotype blocks particularly on chromosomes 5 (bin5.07), 6 (bin6.02), and 9 (9.03) co-located to regions/bins that have been identified to contain candidate genes involved in membrane transport system that would provide essential tolerance to the plant. The regions on chromosome 1 (bin1.04), 2 (bin 2.07), 3 (bin 3.05-3.06), 5 (bin5.03), 8 (bin8.05-8.06) also harboured significant SNPs for the other agronomic traits. In addition, the study also looked at the plausibility of identifying tropically adapted maize lines from the working germplasm with cold resilience across growth stages and identified four lines that could be used as breeding starts in the tropical maize breeding pipelines.

Indexed as

Cold-Shock ResponseQuantitative Trait LociGenomicsPhenotypePlant BreedingZea mays

Identifiers

PMID37072497
PMCPMC10113201
OpenAlexW4366279878

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.