Evidence map›Paper›PMID 37072447›Full record

ArticleNature communications2023

Damage dynamics and the role of chance in the timing of E. coli cell death.

Yifan Yang, Omer Karin, Avi Mayo, Xiaohu Song, Peipei Chen, Ana L Santos, Ariel B Lindner, Uri Alon

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
5.7field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 37 citations in OpenAlex.

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  10. Dynamical Network Stability Analysis of Multiple Biological Ages Provides a Framework for Understanding the Aging Process.The journals of gerontology. Series A, Biological sciences and medical sciences · 2024
    Article
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  14. Nonlethal deleterious mutation-induced stress accelerates bacterial aging.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  15. Article
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  18. Transcriptional drift in aging cells: A global de-controller.bioRxiv : the preprint server for biology · 2023
    Article
  19. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 4 countries.

Yifan YangDepartment of molecular Cell biology, Weizmann Institute of Science, 71600, Rehovot, Israel. yifan.yang@weizmann.ac.il.ORCID http://orcid.org/0000-0001-6697-0198
Omer KarinDepartment of molecular Cell biology, Weizmann Institute of Science, 71600, Rehovot, Israel.
Avi MayoDepartment of molecular Cell biology, Weizmann Institute of Science, 71600, Rehovot, Israel.ORCID http://orcid.org/0000-0002-4479-3423
Xiaohu SongUniversité de Paris - INSERM Unit 1284, Center for Research and Interdisciplinarity (CRI), Paris, F-75004, France.
Peipei ChenUniversité de Paris - INSERM Unit 1284, Center for Research and Interdisciplinarity (CRI), Paris, F-75004, France.ORCID http://orcid.org/0000-0001-7617-3715
Ana L SantosUniversité de Paris - INSERM Unit 1284, Center for Research and Interdisciplinarity (CRI), Paris, F-75004, France.
Ariel B LindnerUniversité de Paris - INSERM Unit 1284, Center for Research and Interdisciplinarity (CRI), Paris, F-75004, France.ORCID http://orcid.org/0000-0001-5015-6511
Uri AlonDepartment of molecular Cell biology, Weizmann Institute of Science, 71600, Rehovot, Israel. uri.alon@weizmann.ac.il.ORCID http://orcid.org/0000-0003-1121-5907
Inserm · FRWeizmann Institute of Science · IL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Genetically identical cells in the same stressful condition die at different times. The origin of this stochasticity is unclear; it may arise from different initial conditions that affect the time of demise, or from a stochastic damage accumulation mechanism that erases the initial conditions and instead amplifies noise to generate different lifespans. To address this requires measuring damage dynamics in individual cells over the lifespan, but this has rarely been achieved. Here, we used a microfluidic device to measure membrane damage in 635 carbon-starved Escherichia coli cells at high temporal resolution. We find that initial conditions of damage, size or cell-cycle phase do not explain most of the lifespan variation. Instead, the data points to a stochastic mechanism in which noise is amplified by a rising production of damage that saturates its own removal. Surprisingly, the relative variation in damage drops with age: cells become more similar to each other in terms of relative damage, indicating increasing determinism with age. Thus, chance erases initial conditions and then gives way to increasingly deterministic dynamics that dominate the lifespan distribution.

Indexed as

Escherichia coliCell DeathCell DivisionStochastic Processes

Identifiers

PMID37072447
PMCPMC10113371
OpenAlexW4366278330

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.