Evidence map›Paper›PMID 37072400›Full record

ArticleNature communications2023

A VEL3 histone deacetylase complex establishes a maternal epigenetic state controlling progeny seed dormancy.

Xiaochao Chen, Dana R MacGregor, Francesca L Stefanato, Naichao Zhang, Thiago Barros-Galvão, Steven Penfield

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
11.9field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 31 citations in OpenAlex.

  1. Review
  2. Review
  3. Review
  4. Review
  5. Review
  6. Review
  7. Adaptation of seed dormancy to maternal climate occurs via intergenerational transport of abscisic acid.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  8. Map-based cloning of ZmSS5, construction and validation of its regulatory pathway for maize kernel weight.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2025
    Article
  9. Article
  10. Review
  11. Article
  12. Review
  13. Article
  14. Article
  15. Distinct accessory roles ofGenes & development · 2023
    Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 2 countries.

Xiaochao ChenDepartment of Crop Genetics, John Innes Centre, Norwich Research Park, Norwich, NR4 7UH, UK.
Dana R MacGregorDepartment of Crop Genetics, John Innes Centre, Norwich Research Park, Norwich, NR4 7UH, UK.ORCID http://orcid.org/0000-0003-0543-0408
Francesca L StefanatoDepartment of Crop Genetics, John Innes Centre, Norwich Research Park, Norwich, NR4 7UH, UK.ORCID http://orcid.org/0000-0002-7961-6478
Naichao ZhangDepartment of Crop Genetics, John Innes Centre, Norwich Research Park, Norwich, NR4 7UH, UK.
Thiago Barros-GalvãoDepartment of Crop Genetics, John Innes Centre, Norwich Research Park, Norwich, NR4 7UH, UK.ORCID http://orcid.org/0000-0002-0112-7084
Steven PenfieldDepartment of Crop Genetics, John Innes Centre, Norwich Research Park, Norwich, NR4 7UH, UK. steven.penfield@jic.ac.uk.ORCID http://orcid.org/0000-0001-7749-8298
John Innes Centre · GB

Funding

Biotechnology and Biological Sciences Research Council BB/L003198/2Biotechnology and Biological Sciences Research Council BB/T003030/1
6 · The paper itself

Abstract

Mother plants play an important role in the control of dormancy and dispersal characters of their progeny. In Arabidopsis seed dormancy is imposed by the embryo-surrounding tissues of the endosperm and seed coat. Here we show that VERNALIZATION5/VIN3-LIKE 3 (VEL3) maintains maternal control over progeny seed dormancy by establishing an epigenetic state in the central cell that primes the depth of primary seed dormancy later established during seed maturation. VEL3 colocalises with MSI1 in the nucleolus and associates with a histone deacetylase complex. Furthermore, VEL3 preferentially associates with pericentromeric chromatin and is required for deacetylation and H3K27me3 deposition established in the central cell. The epigenetic state established by maternal VEL3 is retained in mature seeds, and controls seed dormancy in part through repression of programmed cell death-associated gene ORE1. Our data demonstrates a mechanism by which maternal control of progeny seed physiology persists post-shedding, maintaining parental control of seed behaviour.

Indexed as

ArabidopsisArabidopsis ProteinsDNA-Binding ProteinsEpigenesis, GeneticGene Expression Regulation, PlantGerminationHistone DeacetylasesMembrane ProteinsPlant DormancySeedsTranscription FactorsArabidopsis ProteinsAt2g18870 protein, ArabidopsisDNA-Binding ProteinsHistone DeacetylasesMembrane ProteinsTranscription FactorsVIN3 protein, Arabidopsis

Identifiers

PMID37072400
PMCPMC10113200
OpenAlexW4366352952

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.