Evidence map›Paper›PMID 37072398›Full record

ArticleNature communications2023

Distinct spatial immune microlandscapes are independently associated with outcomes in triple-negative breast cancer.

Jodi M Carter, Saranya Chumsri, Douglas A Hinerfeld, Yaohua Ma, Xue Wang, David Zahrieh, David W Hillman, Kathleen S Tenner, Jennifer M Kachergus, Heather Ann Brauer and 16 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
9.2field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 40 citations in OpenAlex.

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  7. Spatial omics for profiling the dynamic tumor microenvironment.Clinical & translational immunology · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

26 authors at 11 institutions in 4 countries.

Jodi M Carter *Department of Laboratory Medicine and Pathology, University of Alberta, Edmonton, Canada.
Saranya Chumsri *Department of Medicine, Division of Hematology and Oncology, Mayo Clinic, Jacksonville, FL, USA.
Douglas A Hinerfeld *Ultima Genomics, Newark, CA, USA.
Yaohua MaDepartment of Health Science Research, Division of Biomedical Statistics and Informatics, Mayo Clinic, Jacksonville, FL, USA.
Xue WangDepartment of Health Science Research, Division of Biomedical Statistics and Informatics, Mayo Clinic, Jacksonville, FL, USA.ORCID 0000-0003-1964-4124
David ZahriehDepartment of Health Science Research, Division of Biomedical Statistics and Informatics, Mayo Clinic, Rochester, MN, USA.
David W HillmanDepartment of Health Science Research, Division of Biomedical Statistics and Informatics, Mayo Clinic, Rochester, MN, USA.ORCID 0000-0002-0519-1147
Kathleen S TennerDepartment of Health Science Research, Division of Biomedical Statistics and Informatics, Mayo Clinic, Rochester, MN, USA.
Jennifer M KachergusDepartment of Cancer Biology, Mayo Clinic, Jacksonville, FL, USA.
Heather Ann BrauerBill and Melinda Gates Foundation, Seattle, WA, USA.
Sarah E WarrenKite Pharma, Santa Monica, CA, USA.
David HendersonNanoString Technologies, Inc, Seattle, WA, USA.
Ji ShiDepartment of Cancer Biology, Mayo Clinic, Jacksonville, FL, USA.
Yi LiuDepartment of Cancer Biology, Mayo Clinic, Jacksonville, FL, USA.
Heikki JoensuuDepartment of Oncology, Helsinki University Hospital and University of Helsinki, Helsinki, Finland.ORCID 0000-0003-0281-2507
Henrik LindmanDepartment of Oncology, University of Uppsala, Uppsala, Sweden.
Roberto A Leon-FerreDepartment of Oncology, Division of Medical Oncology, Mayo Clinic, Rochester, MN, USA.
Judy C BougheyDepartment of Surgery, Mayo Clinic, Rochester, MN, USA.ORCID 0000-0003-3820-3228
Minetta C LiuNatera, Inc, San Carlos, CA, USA.ORCID 0000-0002-8206-5232
James N IngleDepartment of Oncology, Division of Medical Oncology, Mayo Clinic, Rochester, MN, USA.ORCID 0000-0003-1257-7731
Krishna R KalariDepartment of Health Science Research, Division of Biomedical Statistics and Informatics, Mayo Clinic, Rochester, MN, USA.
Fergus J CouchDepartment of Laboratory Medicine and Pathology, Mayo Clinic, Rochester, MN, USA.
Keith L KnutsonDepartment of Immunology, Mayo Clinic, Jacksonville, FL, USA.ORCID 0000-0001-9932-4467
Matthew P GoetzDepartment of Oncology, Division of Medical Oncology, Mayo Clinic, Rochester, MN, USA.
Edith A PerezDepartment of Medicine, Division of Hematology and Oncology, Mayo Clinic, Jacksonville, FL, USA.
E Aubrey ThompsonDepartment of Cancer Biology, Mayo Clinic, Jacksonville, FL, USA. thompson.aubrey@mayo.edu.ORCID 0000-0002-9001-4240
Mayo Clinic in Florida · USMayo Clinic in Arizona · USGates Foundation · USJacksonville College · USKite (United States) · USNanostring Technologies (United States) · USNatera (United States) · USUniversity of Alberta · CAUniversity of Helsinki · FIUppsala University · SEWinnMed · US

Funding

Women's Cancer ProgramP30CA015083 · NCI · MAYO CLINIC ROCHESTER · PI AKHILESH PANDEY · 1985 to 2026
$151.3M
The Role of CHFR in Tumorigenesis and Paclitaxel-Sensitivity in Breast CancerP50CA116201 · NCI · MAYO CLINIC ROCHESTER · PI Fergus Joseph Couch · 2005 to 2026
$49.9M
Institutional Career Development CoreKL2TR002379 · NCATS · MAYO CLINIC ROCHESTER · PI NILUFER ERTEKIN-TANER · 2017 to 2026
$14.9M
NCATS NIH HHS KL2 TR002379NCI NIH HHS P30 CA015083NCI NIH HHS P50 CA116201NCI NIH HHS P50CA116201Susan G. Komen SAC190091
6 · The paper itself

Abstract

The utility of spatial immunobiomarker quantitation in prognostication and therapeutic prediction is actively being investigated in triple-negative breast cancer (TNBC). Here, with high-plex quantitative digital spatial profiling, we map and quantitate intraepithelial and adjacent stromal tumor immune protein microenvironments in systemic treatment-naïve (female only) TNBC to assess the spatial context in immunobiomarker-based prediction of outcome. Immune protein profiles of CD45-rich and CD68-rich stromal microenvironments differ significantly. While they typically mirror adjacent, intraepithelial microenvironments, this is not uniformly true. In two TNBC cohorts, intraepithelial CD40 or HLA-DR enrichment associates with better outcomes, independently of stromal immune protein profiles or stromal TILs and other established prognostic variables. In contrast, intraepithelial or stromal microenvironment enrichment with IDO1 associates with improved survival irrespective of its spatial location. Antigen-presenting and T-cell activation states are inferred from eigenprotein scores. Such scores within the intraepithelial compartment interact with PD-L1 and IDO1 in ways that suggest prognostic and/or therapeutic potential. This characterization of the intrinsic spatial immunobiology of treatment-naïve TNBC highlights the importance of spatial microenvironments for biomarker quantitation to resolve intrinsic prognostic and predictive immune features and ultimately inform therapeutic strategies for clinically actionable immune biomarkers.

Indexed as

Triple Negative Breast NeoplasmsB7-H1 AntigenBiomarkersBiomarkers, TumorCD40 AntigensFemaleHumansLymphocyte ActivationLymphocytes, Tumor-InfiltratingTumor MicroenvironmentB7-H1 AntigenBiomarkersBiomarkers, TumorCD40 Antigens

Identifiers

PMID37072398
PMCPMC10113250
OpenAlexW4366335781

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.