Evidence map›Paper›PMID 37069236›Full record

ArticleScientific data2023

A chromosome-level genome assembly of the yellow-throated marten (Martes flavigula).

Xuesong Mei, Guangshuai Liu, Jiakuo Yan, Chao Zhao, Xibao Wang, Shengyang Zhou, Qinguo Wei, Shihu Zhao, Zhao Liu, Weilai Sha and 1 more

Open access · goldAbstract readDataset
In one paragraph

Article in Scientific data, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.8field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 1 institution in 1 country.

Xuesong Mei *School of Life Sciences, Qufu Normal University, Qufu, 273165, Shandong, China.ORCID 0000-0001-9087-2053
Guangshuai Liu *School of Life Sciences, Qufu Normal University, Qufu, 273165, Shandong, China.
Jiakuo YanSchool of Life Sciences, Qufu Normal University, Qufu, 273165, Shandong, China.
Chao ZhaoSchool of Life Sciences, Qufu Normal University, Qufu, 273165, Shandong, China.
Xibao WangSchool of Life Sciences, Qufu Normal University, Qufu, 273165, Shandong, China.
Shengyang ZhouSchool of Life Sciences, Qufu Normal University, Qufu, 273165, Shandong, China.
Qinguo WeiSchool of Life Sciences, Qufu Normal University, Qufu, 273165, Shandong, China.
Shihu ZhaoSchool of Life Sciences, Qufu Normal University, Qufu, 273165, Shandong, China.ORCID 0000-0003-0139-7743
Zhao LiuSchool of Life Sciences, Qufu Normal University, Qufu, 273165, Shandong, China.
Weilai ShaSchool of Life Sciences, Qufu Normal University, Qufu, 273165, Shandong, China.
Honghai ZhangSchool of Life Sciences, Qufu Normal University, Qufu, 273165, Shandong, China. zhanghonghai67@126.com.
Qufu Normal University · CN

Funding

National Natural Science Foundation of China (National Science Foundation of China) No. 31872242National Natural Science Foundation of China (National Science Foundation of China) No. 31900311National Natural Science Foundation of China (National Science Foundation of China) No. 32000291National Natural Science Foundation of China (National Science Foundation of China) No. 32070405National Natural Science Foundation of China (National Science Foundation of China) No. 32170530
6 · The paper itself

Abstract

The yellow-throated marten (Martes flavigula) is a medium-sized carnivore that is widely distributed across much of Asia and occupies an extensive variety of habitats. We reported a high-quality genome assembly of this organism that was generated using Oxford Nanopore and Hi-C technologies. The final genome sequences contained 215 contigs with a total size of 2,449.15 Mb and a contig N50 length of 68.60 Mb. Using Hi-C analysis, 2,419.20 Mb (98.78%) of the assembled sequences were anchored onto 21 linkage groups. Merqury evaluation suggested that the genome was 94.95% complete with a QV value of 43.75. Additionally, the genome was found to comprise approximately 39.74% repeat sequences, of which long interspersed elements (LINE) that accounted for 26.13% of the entire genome, were the most abundant. Of the 20,464 protein-coding genes, prediction and functional annotation was successfully performed for 20,322 (99.31%) genes. The high-quality, chromosome-level genome of the marten reported in this study will serve as a reference for future studies on genetic diversity, evolution, and conservation biology.

Indexed as

GenomeMustelidaeAnimalsAsiaChromosomesMolecular Sequence AnnotationPhylogenyRepetitive Sequences, Nucleic Acid

Identifiers

PMID37069236
PMCPMC10110515
OpenAlexW4366087851

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.