Evidence map›Paper›PMID 37067098›Full record

ArticleThe Analyst2023

Metric-based analysis of FTIR data to discriminate tissue types in oral cancer.

Barnaby G Ellis, James Ingham, Conor A Whitley, Safaa Al Jedani, Philip J Gunning, Peter Gardner, Richard J Shaw, Steve D Barrett, Asterios Triantafyllou, Janet M Risk and 2 more

Open access · hybridAbstract read
In one paragraph

Article in The Analyst, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
2.5field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 7 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 1 country.

Barnaby G EllisDepartment of Physics, University of Liverpool, L69 7ZE, UK. peterw@liverpool.ac.uk.
James InghamDepartment of Physics, University of Liverpool, L69 7ZE, UK. peterw@liverpool.ac.uk.ORCID http://orcid.org/0000-0001-8938-5581
Conor A WhitleyDepartment of Physics, University of Liverpool, L69 7ZE, UK. peterw@liverpool.ac.uk.
Safaa Al JedaniDepartment of Physics, University of Liverpool, L69 7ZE, UK. peterw@liverpool.ac.uk.
Philip J GunningLiverpool Head and Neck Centre, Department of Molecular and Clinical Cancer Medicine, University of Liverpool, L7 8TX, UK.ORCID http://orcid.org/0000-0003-1942-0171
Peter GardnerManchester Institute of Biotechnology, University of Manchester, 131 Princess Street, Manchester, M1 7DN, UK.ORCID http://orcid.org/0000-0003-4034-3764
Richard J ShawLiverpool Head and Neck Centre, Department of Molecular and Clinical Cancer Medicine, University of Liverpool, L7 8TX, UK.ORCID http://orcid.org/0000-0002-5157-4042
Steve D BarrettDepartment of Physics, University of Liverpool, L69 7ZE, UK. peterw@liverpool.ac.uk.ORCID http://orcid.org/0000-0003-2960-3334
Asterios TriantafyllouDepartment of Cellular Pathology, Liverpool Clinical Laboratories, University of Liverpool, Liverpool, L7 8YE, UK.ORCID http://orcid.org/0000-0001-8752-5595
Janet M RiskLiverpool Head and Neck Centre, Department of Molecular and Clinical Cancer Medicine, University of Liverpool, L7 8TX, UK.ORCID http://orcid.org/0000-0002-8770-7783
Caroline I SmithDepartment of Physics, University of Liverpool, L69 7ZE, UK. peterw@liverpool.ac.uk.ORCID http://orcid.org/0000-0001-6878-0697
Peter WeightmanDepartment of Physics, University of Liverpool, L69 7ZE, UK. peterw@liverpool.ac.uk.ORCID http://orcid.org/0000-0002-0907-3930
University of Liverpool · GBUniversity of Manchester · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A machine learning algorithm (MLA) has predicted the prognosis of oral potentially malignant lesions and discriminated between lymph node tissue and metastatic oral squamous cell carcinoma (OSCC). The MLA analyses metrics, which are ratios of Fourier transform infrared absorbances, and identifies key wavenumbers that can be associated with molecular biomarkers. The wider efficacy of the MLA is now shown in the more complex primary OSCC tumour setting, where it is able to identify seven types of tissue. Three epithelial and four non-epithelial tissue types were discriminated from each other with sensitivities between 82% and 96% and specificities between 90% and 99%. The wavenumbers involved in the five best discriminating metrics for each tissue type were tightly grouped, indicating that small changes in the spectral profiles of the different tissue types are important. The number of samples used in this study was small, but the information will provide a basis for further, larger investigations.

Indexed as

Carcinoma, Squamous CellMouth NeoplasmsAlgorithmsHumansSpectroscopy, Fourier Transform Infrared

Identifiers

PMID37067098
PMCPMC10152457
OpenAlexW4363610776

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.